Detailed information of evm.model.Ap12.1274 in Astrangia poculata

Genomic Location: Ap12:13617101...13627419
NR annotation: RMX54959.1, hypothetical protein pdam_00012712 [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q2TB18Single-strand DNA endonuclease ASTE1 OS=Homo sapiens OX=9606 GN=ASTE1 PE=1 SV=1
Q5RCY5Single-strand DNA endonuclease ASTE1 OS=Pongo abelii OX=9601 GN=ASTE1 PE=2 SV=1
Q8BIR2Single-strand DNA endonuclease ASTE1 OS=Mus musculus OX=10090 GN=Aste1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001491 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12813
all species →		XPG_I_2XPG domain containingDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR039436
all species →		DomainAsteroid domainInterproscan
IPR029060
all species →		Homologous_superfamilyPIN-like domain superfamilyInterproscan
IPR026832
all species →		FamilyAsteroidInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15665
all species →		ASTEROID PROTEINInterproscan

 Gene Ontology
No Gene Ontology signature was detected for evm.model.Ap12.1274. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap12.1274.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap12.1274 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP