Genomic Location: Ap12:13771002...13789005
NR annotation: KAJ7362112.1, aconitate hydratase [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap12.1292 |
| Transcript |
| evm.model.Ap12.1292 |
| Protein |
| evm.model.Ap12.1292 |
| UniProt accession | Description |
|---|---|
| P16276 | Aconitate hydratase, mitochondrial OS=Sus scrofa OX=9823 GN=ACO2 PE=1 SV=1 |
| P20004 | Aconitate hydratase, mitochondrial OS=Bos taurus OX=9913 GN=ACO2 PE=1 SV=4 |
| Q9ER34 | Aconitate hydratase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Aco2 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004434 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00330 all species → | Aconitase | Aconitase family (aconitate hydratase) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001030 all species → | Domain | Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain | Interproscan |
| IPR050926 all species → | Family | Aconitase/IPM Isomerase | Interproscan |
| IPR015931 all species → | Homologous_superfamily | Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 | Interproscan |
| IPR036008 all species → | Homologous_superfamily | Aconitase, iron-sulfur domain | Interproscan |
| IPR018136 all species → | Binding_site | Aconitase family, 4Fe-4S cluster binding site | Interproscan |
| IPR006248 all species → | Family | Aconitase, mitochondrial-like | Interproscan |
| IPR015932 all species → | Homologous_superfamily | Aconitase, domain 2 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43160 all species → | ACONITATE HYDRATASE B | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003994 all species → | Molecular Function | aconitate hydratase activity | Interproscan |
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0006099 all species → | Biological Process | tricarboxylic acid cycle | Interproscan |
| GO:0051539 all species → | Molecular Function | 4 iron, 4 sulfur cluster binding | Interproscan |
evm.model.Ap12.1292.Transcript abundance of evm.model.Ap12.1292 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
