Genomic Location: Ap12:14750914...14754060
NR annotation: XP_020605912.1, cytosolic beta-glucosidase-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap12.1409 |
| Transcript |
| evm.model.Ap12.1409 |
| Protein |
| evm.model.Ap12.1409 |
| UniProt accession | Description |
|---|---|
| Q5RF65 | Cytosolic beta-glucosidase OS=Pongo abelii OX=9601 GN=GBA3 PE=2 SV=1 |
| Q9H227 | Cytosolic beta-glucosidase OS=Homo sapiens OX=9606 GN=GBA3 PE=1 SV=2 |
| P97265 | Cytosolic beta-glucosidase OS=Cavia porcellus OX=10141 GN=Gba3 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001722 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00232 all species → | Glyco_hydro_1 | Glycosyl hydrolase family 1 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001360 all species → | Family | Glycoside hydrolase family 1 | Interproscan |
| IPR033132 all species → | Conserved_site | Glycosyl hydrolases family 1, N-terminal conserved site | Interproscan |
| IPR017853 all species → | Homologous_superfamily | Glycoside hydrolase superfamily | Interproscan |
| IPR018120 all species → | Active_site | Glycoside hydrolase family 1, active site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10353 all species → | GLYCOSYL HYDROLASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004553 all species → | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds | Interproscan |
| GO:0005975 all species → | Biological Process | carbohydrate metabolic process | Interproscan |
| GO:0008422 all species → | Molecular Function | beta-glucosidase activity | Interproscan |
evm.model.Ap12.1409.Transcript abundance of evm.model.Ap12.1409 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
