Detailed information of evm.model.Ap12.1413 in Astrangia poculata

Genomic Location: Ap12:14767703...14781834
NR annotation: XP_020605688.1, coilin-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q09003Coilin OS=Xenopus laevis OX=8355 GN=coil PE=2 SV=2
Q5SU73Coilin OS=Mus musculus OX=10090 GN=Coil PE=1 SV=1
P38432Coilin OS=Homo sapiens OX=9606 GN=COIL PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007144 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15862
all species →		Coilin_NCoilin N-terminusFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR031722
all species →		DomainCoilin, N-terminal domainInterproscan
IPR024822
all species →		FamilyCoilinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15197
all species →		COILIN P80Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000387
all species →		Biological Processspliceosomal snRNP assemblyInterproscan
GO:0015030
all species →		Cellular ComponentCajal bodyInterproscan
GO:0030619
all species →		Molecular FunctionU1 snRNA bindingInterproscan
GO:0030620
all species →		Molecular FunctionU2 snRNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K13150COIL, CLN80; coilin-Spliceosomeko03041deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap12.1413 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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