Detailed information of evm.model.Ap12.1415 in Astrangia poculata

Genomic Location: Ap12:14807556...14812991
NR annotation: XP_020605625.1, bifunctional arginine demethylase and lysyl-hydroxylase JMJD6-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B5XF11Lysine-specific demethylase 8 OS=Salmo salar OX=8030 GN=kdm8 PE=2 SV=1
A8E534Lysine-specific demethylase 8 OS=Danio rerio OX=7955 GN=kdm8 PE=2 SV=1
B2GUS6Lysine-specific demethylase 8 OS=Xenopus tropicalis OX=8364 GN=kdm8 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0009559 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13621
all species →		Cupin_8Cupin-like domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003347
all species →		DomainJmjC domainInterproscan
IPR041667
all species →		DomainCupin-like domain 8Interproscan
IPR050910
all species →		FamilyJMJD6 family arginine demethylases/lysyl-hydroxylasesInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12480
all species →		ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0016706
all species →		Molecular Function2-oxoglutarate-dependent dioxygenase activityInterproscan
GO:0018126
all species →		Biological Processprotein hydroxylationInterproscan
GO:0043565
all species →		Molecular Functionsequence-specific DNA bindingInterproscan
GO:0045905
all species →		Biological Processpositive regulation of translational terminationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap12.1415.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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