Detailed information of evm.model.Ap12.1425 in Astrangia poculata

Genomic Location: Ap12:14902799...14936915
NR annotation: XP_020605480.1, sodium-independent sulfate anion transporter-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
G3C7W6Sodium-independent sulfate anion transporter OS=Cavia porcellus OX=10141 GN=Slc26a11 PE=2 SV=1
Q86WA9Sodium-independent sulfate anion transporter OS=Homo sapiens OX=9606 GN=SLC26A11 PE=1 SV=2
Q58DD2Sodium-independent sulfate anion transporter OS=Bos taurus OX=9913 GN=SLC26A11 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001493 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01740
all species →
STASSTAS domainDomainInterproscan
PF00916
all species →
Sulfate_transpSulfate permease familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002645
all species →
DomainSTAS domainInterproscan
IPR036513
all species →
Homologous_superfamilySTAS domain superfamilyInterproscan
IPR001902
all species →
FamilySLC26A/SulP transporterInterproscan
IPR011547
all species →
DomainSLC26A/SulP transporter domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11814
all species →
SULFATE TRANSPORTERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005887
all species →
Cellular Componentplasma membraneInterproscan
GO:0015116
all species →
Molecular Functionsulfate transmembrane transporter activityInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0055085
all species →
Biological Processtransmembrane transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K14708SLC26A11; solute carrier family 26 (sodium-independent sulfate anion transporter), member 11-Transportersko02000deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap12.1425 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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