Gene detail

Detailed information of evm.model.Ap12.1477 in Astrangia poculata

Genomic Location: Ap12:15530685...15537991
NR annotation: CAH3013933.1, unnamed protein product [Porites evermanni]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B5XAM2	Large ribosomal subunit protein mL62 OS=Salmo salar OX=8030 GN=mrpl58 PE=2 SV=1
D2HD32	Large ribosomal subunit protein mL62 OS=Ailuropoda melanoleuca OX=9646 GN=MRPL58 PE=3 SV=1
Q14197	Large ribosomal subunit protein mL62 OS=Homo sapiens OX=9606 GN=MRPL58 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007905 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00472 all species →	RF-1	RF-1 domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052104 all species →	Family	Mitochondrial Release Factor mL62	Interproscan
IPR000352 all species →	Domain	Peptide chain release factor class I	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11075 all species →	PEPTIDE CHAIN RELEASE FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004045 all species →	Molecular Function	aminoacyl-tRNA hydrolase activity	Interproscan
GO:0005762 all species →	Cellular Component	mitochondrial large ribosomal subunit	Interproscan
GO:0016150 all species →	Molecular Function	translation release factor activity, codon nonspecific	Interproscan
GO:0070126 all species →	Biological Process	mitochondrial translational termination	Interproscan
GO:0003747 all species →	Molecular Function	translation release factor activity	Interproscan
GO:0006415 all species →	Biological Process	translational termination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15033	ICT1, MRPL58; peptidyl-tRNA hydrolase ICT1	EC:3.1.1.29	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.