Genomic Location: Ap12:15583039...15587794
NR annotation: XP_022794566.1, cytochrome c oxidase subunit 6b-2-like [Stylophora pistillata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap12.1483 |
| Transcript |
| evm.model.Ap12.1483 |
| Protein |
| evm.model.Ap12.1483 |
| UniProt accession | Description |
|---|---|
| P56391 | Cytochrome c oxidase subunit 6B1 OS=Mus musculus OX=10090 GN=Cox6b1 PE=1 SV=2 |
| Q5RCT0 | Cytochrome c oxidase subunit 6B1 OS=Pongo abelii OX=9601 GN=COX6B1 PE=3 SV=3 |
| P14854 | Cytochrome c oxidase subunit 6B1 OS=Homo sapiens OX=9606 GN=COX6B1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0009553 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02297 all species → | COX6B | Cytochrome oxidase c subunit VIb | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003213 all species → | Family | Cytochrome c oxidase, subunit VIb | Interproscan |
| IPR036549 all species → | Homologous_superfamily | Cytochrome c oxidase, subunit VIb superfamily | Interproscan |
| IPR048280 all species → | Family | Cytochrome oxidase c subunit VIb-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11387 all species → | CYTOCHROME C OXIDASE SUBUNIT 6B | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0045277 all species → | Cellular Component | respiratory chain complex IV | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02267 | COX6B; cytochrome c oxidase subunit 6b | - | Non-alcoholic fatty liver disease | ko04932 | deepkoala |
Transcript abundance of evm.model.Ap12.1483 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
