Gene detail

Detailed information of evm.model.Ap12.1547.1.5f15e511 in Astrangia poculata

Genomic Location: Ap12:16259467...16269351
NR annotation: KAJ7390175.1, TATA element modulatory factor 1 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.1547.1.5f15e511

atgagttggtttgatacatcaagcttctcttctttcgctaaaacagctttaagtcaagcacaaaatctgcaaaagtccattgataaggtattggatatcccagatgaaactggtgacactgctgctaagtcttcagcttcaagtaaacagaaatctacctcgttatctctgtcaggtggttctgaaaaggaatctacaagaaaatcctcctctttatctgctactgctgcagcctcaaaatcaagcagaaaaacatcttcagacctgaaaaattcgaaagacggtgatgatgaaggaaattcattctggtcatcattcctaggtgactctgtttcttcaaatacttcaaaggctgaacccaaatcttcaagtcgtagaactagtggaagaaaacttggctccaggctcagtggaggacatgatggtggtagtgaggacagaaatgatcctgacaatggtaaaacttcaaaagaaaatacctcatcagcaaggtctttaaaacagcacaaaaagcgggacatcaatctgacggatagtgtgaaatcagaaaaagatttagaatcatcaagtgtgttaatatcacagaagaagaatgcaacaagtggtagtaaagacctgtcttatcaagatgaaaatgcaactgtttctgtaaattctcaagcggttgagaatgctagtcctgagaaggcagaatacaacgcacaagagttgcctgtagcagctgttaacagtgaaaacaaagctaaatcagaaagattaaaactttcttcctctgataagtctcgcaaaggtaagaaagatgttacttcaccagggaacgatgtattcaaggatcaaaatgattctttggtgcaagatgtttctgctgctggagacagtgaagtgtccaaggcgaaaaaagcaatggcttctcataaagaaccggaatctttattggaagaagaaagccaaagtctggacacagatactgcagattcttctcaaaaacagcaattcagtgaaacacattacacagctgaaaacatattagacacttctcattcgcacaagctcagctcacaagatgtcgaggatggattttctaatgtagctagcaagtcaatgagctcagaaattgatggagcatcagttgtagatccaacaaacaatgccgtcatcaatgagaaagctggacaagacaatcaacaaaaaccagctgaacaaaataattttcttgatgttgaacctctggccagttcaaccccaaatcaccgtgtaaaggaacagtctgcattactggacaaggcagcaacaactgaattaatacctatacagcctgctgatgaaaatgaggaaggcttaaatcagattgaagacttgttacctgatgcagctcataattcagaatccccagctacaggtatcaaagaaaacagcagcatatcagagaatgtaacaggaatgtttgtagaagcagcatctgtagtagaagaggaagaatctccacagagcatcccaaaacaggaaatgaaccagacagcttctgatgttaataatgctgttaacagaatgccagagactacagagataattccagaaaatgaaacagagaaaatggaacctaatttgatggggaatgatgctaattctactgaaagttcagaagacttaaagaaaaagattacagaacttgaaaacgaagtttctaacctcaaacatgtcattgaagtacgtgagaataagctagttgaagtaagtaaagaaaatgtggacttgcaggagacaagtgctgtcctgagaagtcaacttaagcaagcagaggctgcaatgaaagctgaggatgaagaaatagatgaagtcagacaagaatttactgtaagggttgcagctacagaaaagaaatttcaagctgcagcaaaggagagagatcggttgaaggtgcttttggaagaaacagagcagtctttaagtgccaggaatgatcgtcagtctgaagagtttacaacattactcaaggaaaaagatgatcaaattgctcagttattagaggaaggtgaaaagttgtccaaacaacaacttcaaagcaacaacgtcataaagaaactgagaaataaagaaaaagaaaatgatgcactgataaagaaaaacagcaaattattggaggatgcaacatctgaaaataaaaagctaactgaagtcttgcaagtgaaagaagacacagaaaggaaacaagcagatgctattacacaactgaatgcttatgttgagaaacaagaagcacaaatgagtaaactgaagtctgaattagatgattctgcagagaaaattagaagcatgcaagctgcacttgacaatgcatacaaacagctggcggacttacataaagaaaatgcctctaaagatagtgcggtgcaggaagccactctcagtgctgagatgactgctaaggaaggactgcgaattgcgatggagaagaaagaaagacaatttaaaaatgaaattgaggcactagaattccagatcagtgaccttcaaactggtttgcggcgcagtgaacagcaggccagtagaagagaagataatcttcgtcaggaaatcagtgatctgcagcaggttagactgacaacaagaccacagaccagtcaaatgtttcttttctctaaaactttgtgtagtgatctcgttcgtttcctttccaaaattatttggtcttcacacaagtga

Transcript

evm.model.Ap12.1547.1.5f15e511

ATGAGTTGGTTTGATACATCAAGCTTCTCTTCTTTCGCTAAAACAGCTTTAAGTCAAGCACAAAATCTGCAAAAGTCCATTGATAAGGTATTGGATATCCCAGATGAAACTGGTGACACTGCTGCTAAGTCTTCAGCTTCAAGTAAACAGAAATCTACCTCGTTATCTCTGTCAGGTGGTTCTGAAAAGGAATCTACAAGAAAATCCTCCTCTTTATCTGCTACTGCTGCAGCCTCAAAATCAAGCAGAAAAACATCTTCAGACCTGAAAAATTCGAAAGACGGTGATGATGAAGGAAATTCATTCTGGTCATCATTCCTAGGTGACTCTGTTTCTTCAAATACTTCAAAGGCTGAACCCAAATCTTCAAGTCGTAGAACTAGTGGAAGAAAACTTGGCTCCAGGCTCAGTGGAGGACATGATGGTGGTAGTGAGGACAGAAATGATCCTGACAATGGTAAAACTTCAAAAGAAAATACCTCATCAGCAAGGTCTTTAAAACAGCACAAAAAGCGGGACATCAATCTGACGGATAGTGTGAAATCAGAAAAAGATTTAGAATCATCAAGTGTGTTAATATCACAGAAGAAGAATGCAACAAGTGGTAGTAAAGACCTGTCTTATCAAGATGAAAATGCAACTGTTTCTGTAAATTCTCAAGCGGTTGAGAATGCTAGTCCTGAGAAGGCAGAATACAACGCACAAGAGTTGCCTGTAGCAGCTGTTAACAGTGAAAACAAAGCTAAATCAGAAAGATTAAAACTTTCTTCCTCTGATAAGTCTCGCAAAGGTAAGAAAGATGTTACTTCACCAGGGAACGATGTATTCAAGGATCAAAATGATTCTTTGGTGCAAGATGTTTCTGCTGCTGGAGACAGTGAAGTGTCCAAGGCGAAAAAAGCAATGGCTTCTCATAAAGAACCGGAATCTTTATTGGAAGAAGAAAGCCAAAGTCTGGACACAGATACTGCAGATTCTTCTCAAAAACAGCAATTCAGTGAAACACATTACACAGCTGAAAACATATTAGACACTTCTCATTCGCACAAGCTCAGCTCACAAGATGTCGAGGATGGATTTTCTAATGTAGCTAGCAAGTCAATGAGCTCAGAAATTGATGGAGCATCAGTTGTAGATCCAACAAACAATGCCGTCATCAATGAGAAAGCTGGACAAGACAATCAACAAAAACCAGCTGAACAAAATAATTTTCTTGATGTTGAACCTCTGGCCAGTTCAACCCCAAATCACCGTGTAAAGGAACAGTCTGCATTACTGGACAAGGCAGCAACAACTGAATTAATACCTATACAGCCTGCTGATGAAAATGAGGAAGGCTTAAATCAGATTGAAGACTTGTTACCTGATGCAGCTCATAATTCAGAATCCCCAGCTACAGGTATCAAAGAAAACAGCAGCATATCAGAGAATGTAACAGGAATGTTTGTAGAAGCAGCATCTGTAGTAGAAGAGGAAGAATCTCCACAGAGCATCCCAAAACAGGAAATGAACCAGACAGCTTCTGATGTTAATAATGCTGTTAACAGAATGCCAGAGACTACAGAGATAATTCCAGAAAATGAAACAGAGAAAATGGAACCTAATTTGATGGGGAATGATGCTAATTCTACTGAAAGTTCAGAAGACTTAAAGAAAAAGATTACAGAACTTGAAAACGAAGTTTCTAACCTCAAACATGTCATTGAAGTACGTGAGAATAAGCTAGTTGAAGTAAGTAAAGAAAATGTGGACTTGCAGGAGACAAGTGCTGTCCTGAGAAGTCAACTTAAGCAAGCAGAGGCTGCAATGAAAGCTGAGGATGAAGAAATAGATGAAGTCAGACAAGAATTTACTGTAAGGGTTGCAGCTACAGAAAAGAAATTTCAAGCTGCAGCAAAGGAGAGAGATCGGTTGAAGGTGCTTTTGGAAGAAACAGAGCAGTCTTTAAGTGCCAGGAATGATCGTCAGTCTGAAGAGTTTACAACATTACTCAAGGAAAAAGATGATCAAATTGCTCAGTTATTAGAGGAAGGTGAAAAGTTGTCCAAACAACAACTTCAAAGCAACAACGTCATAAAGAAACTGAGAAATAAAGAAAAAGAAAATGATGCACTGATAAAGAAAAACAGCAAATTATTGGAGGATGCAACATCTGAAAATAAAAAGCTAACTGAAGTCTTGCAAGTGAAAGAAGACACAGAAAGGAAACAAGCAGATGCTATTACACAACTGAATGCTTATGTTGAGAAACAAGAAGCACAAATGAGTAAACTGAAGTCTGAATTAGATGATTCTGCAGAGAAAATTAGAAGCATGCAAGCTGCACTTGACAATGCATACAAACAGCTGGCGGACTTACATAAAGAAAATGCCTCTAAAGATAGTGCGGTGCAGGAAGCCACTCTCAGTGCTGAGATGACTGCTAAGGAAGGACTGCGAATTGCGATGGAGAAGAAAGAAAGACAATTTAAAAATGAAATTGAGGCACTAGAATTCCAGATCAGTGACCTTCAAACTGGTTTGCGGCGCAGTGAACAGCAGGCCAGTAGAAGAGAAGATAATCTTCGTCAGGAAATCAGTGATCTGCAGCAGGTTAGACTGACAACAAGACCACAGACCAGTCAAATGTTTCTTTTCTCTAAAACTTTGTGTAGTGATCTCGTTCGTTTCCTTTCCAAAATTATTTGGTCTTCACACAAGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B9EKI3	TATA element modulatory factor OS=Mus musculus OX=10090 GN=Tmf1 PE=1 SV=2
P82094	TATA element modulatory factor OS=Homo sapiens OX=9606 GN=TMF1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005650 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12329 all species →	TMF_DNA_bd	TATA element modulatory factor 1 DNA binding	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052602 all species →	Family	Growth and transcription regulation protein	Interproscan
IPR022092 all species →	Family	TATA element modulatory factor 1 DNA binding	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46515 all species →	TATA ELEMENT MODULATORY FACTOR TMF1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14281	TACC1; transforming acidic coiled-coil-containing protein 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.