Gene detail

Detailed information of evm.model.Ap12.1552 in Astrangia poculata

Genomic Location: Ap12:16314003...16331281
NR annotation: XP_020609364.1, formin-like protein CG32138 isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.1552

atggtgcaagatcgagctgggaatgcaaaagctaaacgtaattataaaaagaagaagagcgaacttcgaaaatccaggctcagtatgttcgattcagtgagatcgtcctcgagcgctgtttcagtgtctcaaagttcgtcaggtggcgacgatacagagtttgatgttgacgacgaattacccgatgatgaagaaatcgagcgaagattttccactttgttggaaaagatgacattaccaccagaaagagcagcggaacttgccaaaagtccgaaagctcataaatggaaaatgattaaagcgaaggagttaatgcagcccaagtactcttcaggcttctatattgaacagttaaagacccacagggatattgcacttaacaaaacattaaacaagaaactcctcaagggtctggagcctgtggagatgatattgaggtccctggaggttgaccttcgaacacatccaaataccacctggttacgtgaatttatagatgatccctacagaggccacattgcattaatagaattcctacagtacctgcacttaaatcaaccactgcctgaagatgagaacattccaaagaaaaaaggaaaaccagacgttctggccagagactttgttgatgaacatttgtgtcttatgtgtataagagtcttaatgaggaacaagtatggctttcagtccatcatgagtgtagatgactgcctcaaatccatcatcctctgtttaaaaatcgacagtttaaaaacacgagcactggttgttaagatgttaacacaggcctgcatgcagtcagaatattatgacaaagttattgatgcagtgaggttttatgcaagaacaacgagggaggtccggacatttgaaacactgataaacttgatgtacaagagacctatatcaccccagttccagacactgtgtttaacttttttcaactcattaattggtatctcaccaacatttaacaagaaagtgtttcatcaacaagagattgaagatgcaggattggatgtggaacgcctggaaaggaccctggagggtatggaggcaggatctgtacgggaagctctaaaaacatggcaggacaactatattcacgtgcaaggtgttatggatgagtttgttactctcaaagaaagaaccaagtacctgagagatgaggttgatcttttgcaaacaaaacttgaggaattgcaaagggagaacagtgaactcaagagacataacacagagcttgatatgcgatctgaagaataccgactacgagccacagaattacagacaacgttggagaatgttgtgaaacaagtaaagcatgaagcagaccaagctgagttacccaatgaactcattaccagtgtaaccgaggctgcagcagctgtagcaccaccccccatcgctccaccaccaccaccaccccctcccccaccagcaccagatggtacattagttcctcccccaccacctccccctgagttggatggtactccatccttgagacggcgtctagctgccaataaatgtcgactgccaatgctgaactggactcctatgacgtcacaatcagacgccagtgcattcttcaagggtataagcgacgaagaagtcatgggattgctggactttgctgattttgacaggaggttcgagcttaaaattaatgaagcttctgaggatcttattgcgaagaaagaacaagccttaaagcgagcagcagagcaaatcacagttatcgagccaaaaagggcaagaaatcttgtgattgcgcgtcgtcgcatacagcactctacagaaacaattgggttcctgatagaccagtgtgacttggtggagcttccacccgagcatgcagaattactgctcaagtttgtacctaccaaggaagagctggcaggactggctcaacatgcagatcagtattcaaagctggctgaagctgaacagtttctgtttgagattgctaaagtggagcggtacgaggccaaacttagtgttatggcgtttattggtgtgtttgatgagctcatgagaactgttatgccgcaagtggatgctgttctgagagcggctacttccattgtgaacagtggcaagctaaaaaagttatttaagattatactgatatatggaaactacatgaatagcagcagaagaggacttgcgtatggctttaaactggaatctttaaacaagttggaagacactcggactacggacagaaaacaaacattccttagttatatcgtggagattgtgcagaaaaggttcccggatctccaggacttctcagaggaactgtatcttgacggagcaactacagtttccatgcagactctagcagctgatgtgcagggattgcggaaaggcctggacctgacaaagtctgagagagacaggcaaccagacaacttcattatatttacgttctataacgcggctttcaagaaagtccagcgtatcactgaacgttaccgtaagatggacgaagtttatgcgcagatgtgcactctgttcggtgaaaaccctagagtggttgaaccttccgacttcttcaaagccttcattgacttcattgctaacttcaagaaagctcagagggacttggaagaattgaaaagcccacagaagagtcggacgctaagtaatggcgaatcatcaaagactcatattcaagttgctgctgcagctgctaatgagggtcagcggagatccatgtataacaagaacaaccggttcttggtgacgtag

Transcript

evm.model.Ap12.1552

ATGGTGCAAGATCGAGCTGGGAATGCAAAAGCTAAACGTAATTATAAAAAGAAGAAGAGCGAACTTCGAAAATCCAGGCTCAGTATGTTCGATTCAGTGAGATCGTCCTCGAGCGCTGTTTCAGTGTCTCAAAGTTCGTCAGGTGGCGACGATACAGAGTTTGATGTTGACGACGAATTACCCGATGATGAAGAAATCGAGCGAAGATTTTCCACTTTGTTGGAAAAGATGACATTACCACCAGAAAGAGCAGCGGAACTTGCCAAAAGTCCGAAAGCTCATAAATGGAAAATGATTAAAGCGAAGGAGTTAATGCAGCCCAAGTACTCTTCAGGCTTCTATATTGAACAGTTAAAGACCCACAGGGATATTGCACTTAACAAAACATTAAACAAGAAACTCCTCAAGGGTCTGGAGCCTGTGGAGATGATATTGAGGTCCCTGGAGGTTGACCTTCGAACACATCCAAATACCACCTGGTTACGTGAATTTATAGATGATCCCTACAGAGGCCACATTGCATTAATAGAATTCCTACAGTACCTGCACTTAAATCAACCACTGCCTGAAGATGAGAACATTCCAAAGAAAAAAGGAAAACCAGACGTTCTGGCCAGAGACTTTGTTGATGAACATTTGTGTCTTATGTGTATAAGAGTCTTAATGAGGAACAAGTATGGCTTTCAGTCCATCATGAGTGTAGATGACTGCCTCAAATCCATCATCCTCTGTTTAAAAATCGACAGTTTAAAAACACGAGCACTGGTTGTTAAGATGTTAACACAGGCCTGCATGCAGTCAGAATATTATGACAAAGTTATTGATGCAGTGAGGTTTTATGCAAGAACAACGAGGGAGGTCCGGACATTTGAAACACTGATAAACTTGATGTACAAGAGACCTATATCACCCCAGTTCCAGACACTGTGTTTAACTTTTTTCAACTCATTAATTGGTATCTCACCAACATTTAACAAGAAAGTGTTTCATCAACAAGAGATTGAAGATGCAGGATTGGATGTGGAACGCCTGGAAAGGACCCTGGAGGGTATGGAGGCAGGATCTGTACGGGAAGCTCTAAAAACATGGCAGGACAACTATATTCACGTGCAAGGTGTTATGGATGAGTTTGTTACTCTCAAAGAAAGAACCAAGTACCTGAGAGATGAGGTTGATCTTTTGCAAACAAAACTTGAGGAATTGCAAAGGGAGAACAGTGAACTCAAGAGACATAACACAGAGCTTGATATGCGATCTGAAGAATACCGACTACGAGCCACAGAATTACAGACAACGTTGGAGAATGTTGTGAAACAAGTAAAGCATGAAGCAGACCAAGCTGAGTTACCCAATGAACTCATTACCAGTGTAACCGAGGCTGCAGCAGCTGTAGCACCACCCCCCATCGCTCCACCACCACCACCACCCCCTCCCCCACCAGCACCAGATGGTACATTAGTTCCTCCCCCACCACCTCCCCCTGAGTTGGATGGTACTCCATCCTTGAGACGGCGTCTAGCTGCCAATAAATGTCGACTGCCAATGCTGAACTGGACTCCTATGACGTCACAATCAGACGCCAGTGCATTCTTCAAGGGTATAAGCGACGAAGAAGTCATGGGATTGCTGGACTTTGCTGATTTTGACAGGAGGTTCGAGCTTAAAATTAATGAAGCTTCTGAGGATCTTATTGCGAAGAAAGAACAAGCCTTAAAGCGAGCAGCAGAGCAAATCACAGTTATCGAGCCAAAAAGGGCAAGAAATCTTGTGATTGCGCGTCGTCGCATACAGCACTCTACAGAAACAATTGGGTTCCTGATAGACCAGTGTGACTTGGTGGAGCTTCCACCCGAGCATGCAGAATTACTGCTCAAGTTTGTACCTACCAAGGAAGAGCTGGCAGGACTGGCTCAACATGCAGATCAGTATTCAAAGCTGGCTGAAGCTGAACAGTTTCTGTTTGAGATTGCTAAAGTGGAGCGGTACGAGGCCAAACTTAGTGTTATGGCGTTTATTGGTGTGTTTGATGAGCTCATGAGAACTGTTATGCCGCAAGTGGATGCTGTTCTGAGAGCGGCTACTTCCATTGTGAACAGTGGCAAGCTAAAAAAGTTATTTAAGATTATACTGATATATGGAAACTACATGAATAGCAGCAGAAGAGGACTTGCGTATGGCTTTAAACTGGAATCTTTAAACAAGTTGGAAGACACTCGGACTACGGACAGAAAACAAACATTCCTTAGTTATATCGTGGAGATTGTGCAGAAAAGGTTCCCGGATCTCCAGGACTTCTCAGAGGAACTGTATCTTGACGGAGCAACTACAGTTTCCATGCAGACTCTAGCAGCTGATGTGCAGGGATTGCGGAAAGGCCTGGACCTGACAAAGTCTGAGAGAGACAGGCAACCAGACAACTTCATTATATTTACGTTCTATAACGCGGCTTTCAAGAAAGTCCAGCGTATCACTGAACGTTACCGTAAGATGGACGAAGTTTATGCGCAGATGTGCACTCTGTTCGGTGAAAACCCTAGAGTGGTTGAACCTTCCGACTTCTTCAAAGCCTTCATTGACTTCATTGCTAACTTCAAGAAAGCTCAGAGGGACTTGGAAGAATTGAAAAGCCCACAGAAGAGTCGGACGCTAAGTAATGGCGAATCATCAAAGACTCATATTCAAGTTGCTGCTGCAGCTGCTAATGAGGGTCAGCGGAGATCCATGTATAACAAGAACAACCGGTTCTTGGTGACGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IVF7	Formin-like protein 3 OS=Homo sapiens OX=9606 GN=FMNL3 PE=1 SV=3
Q6ZPF4	Formin-like protein 3 OS=Mus musculus OX=10090 GN=Fmnl3 PE=1 SV=2
O95466	Formin-like protein 1 OS=Homo sapiens OX=9606 GN=FMNL1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003245 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02181 all species →	FH2	Formin Homology 2 Domain	Family	Interproscan
PF06371 all species →	Drf_GBD	Diaphanous GTPase-binding Domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010472 all species →	Domain	Formin, FH3 domain	Interproscan
IPR010473 all species →	Domain	Formin, GTPase-binding domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR015425 all species →	Domain	Formin, FH2 domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR014768 all species →	Domain	Rho GTPase-binding/formin homology 3 (GBD/FH3) domain	Interproscan
IPR042201 all species →	Homologous_superfamily	Formin, FH2 domain superfamily	Interproscan
IPR043592 all species →	Family	Formin-like protein, animal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45857 all species →	FORMIN-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0016043 all species →	Biological Process	cellular component organization	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0007010 all species →	Biological Process	cytoskeleton organization	Interproscan
GO:0008360 all species →	Biological Process	regulation of cell shape	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0022604 all species →	Biological Process	regulation of cell morphogenesis	Interproscan
GO:0030866 all species →	Biological Process	cortical actin cytoskeleton organization	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23957	FMNL; formic-like protein	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.