Gene detail

Detailed information of evm.model.Ap12.1593 in Astrangia poculata

Genomic Location: Ap12:16693292...16709579
NR annotation: XP_020609435.1, tectonin beta-propeller repeat-containing protein 1-like isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.1593

atgcatgttcaaccactttgttatctgtttttcacttgtcattttaaggttatttaccgttctggcgtgtcagaaaaatgccctgaaggtgacaagtggatagagataccctccccccaagtaagcatcacccagctgtctgtgagcccatcaggggtggtgtggggagttacctgggagggtgtggctgttgtacgggttggtgtcacttactatcaaccaactggtacagcttgggagaaagttgcgtcacctgttgcatcacctgaagtgggaccttgtcagctgctgcaagtgtctgctggtttaaacagtgtatgggctctaacaaaagatggccaggtttggtttagaaaaggcttgtctagagcaaaactaaatggtgaagaaaatgttgtgactggatcacgatgggtggaaatggttggaaaattttctctaattgcagtgggattgaatgatcaagtgtttgccctcagtactctgggagatcacatctattttcgtacagatgtgacaccaaatgagcttgtaggaagaacatggaaggttgtacatatgagcagaccagtgatatcatgcagtgaagccaccagcatggatacagtcagctctgaaggcagcagcagctacagtgagacggctaatgaaagtgtatttacagactctgacgataactacagtcttcaaagcacctccaatcttccatccaacattgaattcttgacctggctaagtagcggtgcttgtgaagcggactcttcgatgtttacagaaatcattggtagccttttctcctcagcgagcagcatgaatctcataagtctaagcagtagggacgctgtgtggaggaagaacttgatacagagactgcgcacgagagatgaaacagaaacaggccgctatgaccaatacgaggaagctatttcacagggcgagtggtgtaaaaagtctcgcttccagatgttgtttgatgcgaattctaacctctggtacgaatgtgtggtaaaactcgaccaaggagccgaaggacgagaaggagcattactttgttactacgagaaaaactctgtttatgaggaaatgcgaatcgctttgcgggacataacatgcgtttgcgtaattcacaaaatgtcgcggaatcattgctttgccattcacactcctgtccggactcaggaacgtaaccctctggtgatccacacaggcagtgaaaaggaccttaatgactggctcacatcactgtcaagggctacttcacggctgcataagtgtgagggacccgcttcaccaaatgccatctgggcgacatctctctgtggcgacgttttcttttgcgagccgcttctacctgaaagtgagatacagccagctcaactattttggcgccaaattggtgggcacatgcgcaaagtggaaggcggagtggctggagtggtgtgggcgatcggttttgatgggatgccatattattactctggagggtacggtgggggtatatttaccggctttgacagcagcgtgtctgggattcatcagcaggaggattatgattggcattatatatatgagaatcaacgatggaacccgttagaaggatactccgatagacgccttccaagtgaccgatggaactggagcgatgagagcggcgtgtatgaacgaacaagagagggatacgcacttccatcgagtcagtggcaatgggcagatgagcagtggacagtggagaccaagcctaacataactgacaaggacggctggcagtatgctgtggatttcccaaggagttatcaccgtgagcgaggctggaatgactatgtgaggcgaaggcgttggaaaagacgatgtaaactgacaacaactggtccatggattcaagtgacacctcaagtgagactacgtgacgtatcgatccaaatcgacctggcagatggcttgatagcagtgtggactgtggggacgaaaggtgatgtgttataccgacacggagtcacaggggattgtccacagggtactgcgtgggaacacattttaacggacctgccttttatcagtatctctgttggatgtaagagaagggtctggggaatagctgagaatggcaccgcatacttcagggcaggctttggagaaaacaagattacaggggacaggtggtttcacatcagtgaaaggcctcctcatctctatcaagtatccgctggaaagacatcggtttgggctcgcgagaaagatggtacgtgctggtatcgtcagcaaatcacggatacctacccagaaggcaccacgtggcagtctcgacaattccatgtgacgtctctctctgtgggacctaacaaccaggtttggatgatcaaccggaacgccattgaacggcgctacaaagtgacagcatgtgacccattagggaggggctgggaagtcgtcttatcagactgctggcggtggatcagtgtcagggctgccattggagttgacgaagatgtggacgaggccgaagacgttatcgaggctgaagttcaagtttcggggcccaacagtttgcttgcaaaacttgacctcagcgaggtagatatttacagcatgtacgggcagaatgacgttacagtggaaacgcccggtagcgaaatagaagaagacgaattatacaaaggaacaaaggaagggagtgagcagggcaagggaaaataa

Transcript

evm.model.Ap12.1593

ATGCATGTTCAACCACTTTGTTATCTGTTTTTCACTTGTCATTTTAAGGTTATTTACCGTTCTGGCGTGTCAGAAAAATGCCCTGAAGGTGACAAGTGGATAGAGATACCCTCCCCCCAAGTAAGCATCACCCAGCTGTCTGTGAGCCCATCAGGGGTGGTGTGGGGAGTTACCTGGGAGGGTGTGGCTGTTGTACGGGTTGGTGTCACTTACTATCAACCAACTGGTACAGCTTGGGAGAAAGTTGCGTCACCTGTTGCATCACCTGAAGTGGGACCTTGTCAGCTGCTGCAAGTGTCTGCTGGTTTAAACAGTGTATGGGCTCTAACAAAAGATGGCCAGGTTTGGTTTAGAAAAGGCTTGTCTAGAGCAAAACTAAATGGTGAAGAAAATGTTGTGACTGGATCACGATGGGTGGAAATGGTTGGAAAATTTTCTCTAATTGCAGTGGGATTGAATGATCAAGTGTTTGCCCTCAGTACTCTGGGAGATCACATCTATTTTCGTACAGATGTGACACCAAATGAGCTTGTAGGAAGAACATGGAAGGTTGTACATATGAGCAGACCAGTGATATCATGCAGTGAAGCCACCAGCATGGATACAGTCAGCTCTGAAGGCAGCAGCAGCTACAGTGAGACGGCTAATGAAAGTGTATTTACAGACTCTGACGATAACTACAGTCTTCAAAGCACCTCCAATCTTCCATCCAACATTGAATTCTTGACCTGGCTAAGTAGCGGTGCTTGTGAAGCGGACTCTTCGATGTTTACAGAAATCATTGGTAGCCTTTTCTCCTCAGCGAGCAGCATGAATCTCATAAGTCTAAGCAGTAGGGACGCTGTGTGGAGGAAGAACTTGATACAGAGACTGCGCACGAGAGATGAAACAGAAACAGGCCGCTATGACCAATACGAGGAAGCTATTTCACAGGGCGAGTGGTGTAAAAAGTCTCGCTTCCAGATGTTGTTTGATGCGAATTCTAACCTCTGGTACGAATGTGTGGTAAAACTCGACCAAGGAGCCGAAGGACGAGAAGGAGCATTACTTTGTTACTACGAGAAAAACTCTGTTTATGAGGAAATGCGAATCGCTTTGCGGGACATAACATGCGTTTGCGTAATTCACAAAATGTCGCGGAATCATTGCTTTGCCATTCACACTCCTGTCCGGACTCAGGAACGTAACCCTCTGGTGATCCACACAGGCAGTGAAAAGGACCTTAATGACTGGCTCACATCACTGTCAAGGGCTACTTCACGGCTGCATAAGTGTGAGGGACCCGCTTCACCAAATGCCATCTGGGCGACATCTCTCTGTGGCGACGTTTTCTTTTGCGAGCCGCTTCTACCTGAAAGTGAGATACAGCCAGCTCAACTATTTTGGCGCCAAATTGGTGGGCACATGCGCAAAGTGGAAGGCGGAGTGGCTGGAGTGGTGTGGGCGATCGGTTTTGATGGGATGCCATATTATTACTCTGGAGGGTACGGTGGGGGTATATTTACCGGCTTTGACAGCAGCGTGTCTGGGATTCATCAGCAGGAGGATTATGATTGGCATTATATATATGAGAATCAACGATGGAACCCGTTAGAAGGATACTCCGATAGACGCCTTCCAAGTGACCGATGGAACTGGAGCGATGAGAGCGGCGTGTATGAACGAACAAGAGAGGGATACGCACTTCCATCGAGTCAGTGGCAATGGGCAGATGAGCAGTGGACAGTGGAGACCAAGCCTAACATAACTGACAAGGACGGCTGGCAGTATGCTGTGGATTTCCCAAGGAGTTATCACCGTGAGCGAGGCTGGAATGACTATGTGAGGCGAAGGCGTTGGAAAAGACGATGTAAACTGACAACAACTGGTCCATGGATTCAAGTGACACCTCAAGTGAGACTACGTGACGTATCGATCCAAATCGACCTGGCAGATGGCTTGATAGCAGTGTGGACTGTGGGGACGAAAGGTGATGTGTTATACCGACACGGAGTCACAGGGGATTGTCCACAGGGTACTGCGTGGGAACACATTTTAACGGACCTGCCTTTTATCAGTATCTCTGTTGGATGTAAGAGAAGGGTCTGGGGAATAGCTGAGAATGGCACCGCATACTTCAGGGCAGGCTTTGGAGAAAACAAGATTACAGGGGACAGGTGGTTTCACATCAGTGAAAGGCCTCCTCATCTCTATCAAGTATCCGCTGGAAAGACATCGGTTTGGGCTCGCGAGAAAGATGGTACGTGCTGGTATCGTCAGCAAATCACGGATACCTACCCAGAAGGCACCACGTGGCAGTCTCGACAATTCCATGTGACGTCTCTCTCTGTGGGACCTAACAACCAGGTTTGGATGATCAACCGGAACGCCATTGAACGGCGCTACAAAGTGACAGCATGTGACCCATTAGGGAGGGGCTGGGAAGTCGTCTTATCAGACTGCTGGCGGTGGATCAGTGTCAGGGCTGCCATTGGAGTTGACGAAGATGTGGACGAGGCCGAAGACGTTATCGAGGCTGAAGTTCAAGTTTCGGGGCCCAACAGTTTGCTTGCAAAACTTGACCTCAGCGAGGTAGATATTTACAGCATGTACGGGCAGAATGACGTTACAGTGGAAACGCCCGGTAGCGAAATAGAAGAAGACGAATTATACAAAGGAACAAAGGAAGGGAGTGAGCAGGGCAAGGGAAAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80VP0	Tectonin beta-propeller repeat-containing protein 1 OS=Mus musculus OX=10090 GN=Tecpr1 PE=1 SV=1
E1BZR9	Tectonin beta-propeller repeat-containing protein 1 OS=Gallus gallus OX=9031 GN=TECPR1 PE=3 SV=1
Q7Z6L1	Tectonin beta-propeller repeat-containing protein 1 OS=Homo sapiens OX=9606 GN=TECPR1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003752 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06462 all species →	Hyd_WA	Propeller	Repeat	Interproscan
PF06398 all species →	Pex24p	Integral peroxisomal membrane peroxin	Family	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF19193 all species →	Tectonin	Tectonin domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006624 all species →	Repeat	Beta-propeller repeat TECPR	Interproscan
IPR006614 all species →	Domain	Peroxin/Ferlin domain	Interproscan
IPR010482 all species →	Domain	Peroxin domain	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR051513 all species →	Family	Tectonin beta-propeller repeat-containing	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23250 all species →	DYSFERLIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17988	TECPR1; tectonin beta-propeller repeat-containing protein 1	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.