Detailed information of evm.model.Ap12.1702 in Astrangia poculata

Genomic Location: Ap12:17824126...17839433
NR annotation: KAJ7378303.1, hypothetical protein OS493_023550 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9WYJ1L-threonine ammonia-lyase OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=TM_0356 PE=1 SV=1
Q74FW6L-threonine ammonia-lyase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) OX=243231 GN=tdcB PE=1 SV=1
P0AGF8L-threonine dehydratase catabolic TdcB OS=Escherichia coli O157:H7 OX=83334 GN=tdcB PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002333 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00291
all species →		PALPPyridoxal-phosphate dependent enzymeFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050147
all species →		FamilySerine/Threonine DehydrataseInterproscan
IPR036052
all species →		Homologous_superfamilyTryptophan synthase beta chain-like, PALP domain superfamilyInterproscan
IPR001926
all species →		DomainTryptophan synthase beta chain-like, PALP domainInterproscan
IPR044561
all species →		DomainL-threonine ammonia-lyase, ACT domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR48078
all species →		THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003941
all species →		Molecular FunctionL-serine ammonia-lyase activityInterproscan
GO:0004794
all species →		Molecular Functionthreonine deaminase activityInterproscan
GO:0006565
all species →		Biological ProcessL-serine catabolic processInterproscan
GO:0006567
all species →		Biological Processthreonine catabolic processInterproscan
GO:0009097
all species →		Biological Processisoleucine biosynthetic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01754E4.3.1.19, ilvA, tdcB; threonine dehydrataseEC:4.3.1.19
Valine, leucine and isoleucine biosynthesisko00290deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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