Gene detail

Detailed information of evm.model.Ap12.1711 in Astrangia poculata

Genomic Location: Ap12:17941168...17943273
NR annotation: XP_020607358.1, uncharacterized protein LOC110046036 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.1711

atgcttcgtcgagttgtggtggagaactatatcatctttaaaggtcgacaagaactggacttggagagtgcttgtggcgggcgttttcatactcttgtaggggaaaattcaagcggcaagagcagctttgtggcattggttagagcagcaagcaattttgttgacaatgacgaggattttgaggtgataggtaatgacatagctagtgccaaagcagtgtgcgagtttcattttaaacatggacaagagttttcacaatattttgaaagatcgccctcgagtttaactcgagcacttgtgccatccattccttgtgtgtcaggattgttttcatggttttcagacgatatcttaaaatttccaacgcaactaaccaagctactgagagagacgtttggttcagtctcggctttagtacgtgtactttctggaagaaagagctttaatgctagtggtccatctcattgccaattcctttatgttgtctccgaggatgttgtgttggtggtcatcagaaacaatggtgagctctctgcagcttttcatgacccattaccagcaggtgttgatcttatggattggtgtccagacgaggcctttcttcgcaaagtgaaactggatgagaatctgaacaagtccaccatggaccttattgaacatccttcatctgtagagtcttcctcagacactgacgctatgcaaaccaaacatgcagaccttactcacagcaacacactaaagtatcgagatgtcaagaaggtaattatggtcaacctgctcaaaaatctatctcaagaacgtattgacgaagccgtttccttgtttcatgagataatgggtgatcagggtcttgattttcagctagatcttgatggcgacattccagtacgcattctggacaaaggaacccacaggatcattcagcgagtttccgaaggaactttctctgcgtttgttgtagcagcactggttgtctatccattcagccgtaccatcattttcgatgaggtcgccagagggatgcatccattacaagtccgtcgcttgagaacaattctcatgcgagaatcaagaaacagaagaaagtgtatcataaccacgacacattcgtcggaaatggtagaagttgaaagaatcaacctaatttggaggttccaagttcttccatcaggctattgccaaataaggcgtgtcaagtcacattacaacgtcagagatttgcatttcattggtggagctgaagtgagggagatattttttgcgcgatacatagtttgggtcgagggggaaagtgacaagaggttcattcaggcgttgctgaggatgtttgatgaaggaaacccggagctccttaaagccctgtcagagcctggggcagctacaaccggaggcacagatggtgaacattcaccgaggaatggtacagatctatctgtagctgtagaaaacctgttgcaagatcctgcttacaaaagaaagtattacaccaaagacgtcctatccaccatccaagaagccgtccgcagctgtattgtgctgtcaatcagcggcaagaaaaatgtctacaaagctacagcaatatgtaatgatctgggcattccacatgctgtggtatgtgacttagatgttattatccccaactcaaaggagaattcagttcagtctcaattcaacaactgcagtggactatggactagcgcaaccatttctaatgccaaggcaaagcttttggatgaagaacaatgccctgcgtcaaagtgcgttcaagactcaagtcctgagttgataccgaaattgcgcgcatgtagaacagtgggcgaagtcatgaagttttatgacgaaaagcagcgtgtatttacatggcgtgtagatggtggtgaaatagaagatgcaattagattgaccaagtcacagtttggaaagaaattgtggcctgatctatcctttggagatattaaagaccttgttctttgcttattgcaaccacgtaagctacgagaaaggaatccaaaggacaaagacgccacaaagcaaccaaatccagagctcctaagatgtattttcttcctcattcattttttaagggatagtttgaaatcgaattag

Transcript

evm.model.Ap12.1711

ATGCTTCGTCGAGTTGTGGTGGAGAACTATATCATCTTTAAAGGTCGACAAGAACTGGACTTGGAGAGTGCTTGTGGCGGGCGTTTTCATACTCTTGTAGGGGAAAATTCAAGCGGCAAGAGCAGCTTTGTGGCATTGGTTAGAGCAGCAAGCAATTTTGTTGACAATGACGAGGATTTTGAGGTGATAGGTAATGACATAGCTAGTGCCAAAGCAGTGTGCGAGTTTCATTTTAAACATGGACAAGAGTTTTCACAATATTTTGAAAGATCGCCCTCGAGTTTAACTCGAGCACTTGTGCCATCCATTCCTTGTGTGTCAGGATTGTTTTCATGGTTTTCAGACGATATCTTAAAATTTCCAACGCAACTAACCAAGCTACTGAGAGAGACGTTTGGTTCAGTCTCGGCTTTAGTACGTGTACTTTCTGGAAGAAAGAGCTTTAATGCTAGTGGTCCATCTCATTGCCAATTCCTTTATGTTGTCTCCGAGGATGTTGTGTTGGTGGTCATCAGAAACAATGGTGAGCTCTCTGCAGCTTTTCATGACCCATTACCAGCAGGTGTTGATCTTATGGATTGGTGTCCAGACGAGGCCTTTCTTCGCAAAGTGAAACTGGATGAGAATCTGAACAAGTCCACCATGGACCTTATTGAACATCCTTCATCTGTAGAGTCTTCCTCAGACACTGACGCTATGCAAACCAAACATGCAGACCTTACTCACAGCAACACACTAAAGTATCGAGATGTCAAGAAGGTAATTATGGTCAACCTGCTCAAAAATCTATCTCAAGAACGTATTGACGAAGCCGTTTCCTTGTTTCATGAGATAATGGGTGATCAGGGTCTTGATTTTCAGCTAGATCTTGATGGCGACATTCCAGTACGCATTCTGGACAAAGGAACCCACAGGATCATTCAGCGAGTTTCCGAAGGAACTTTCTCTGCGTTTGTTGTAGCAGCACTGGTTGTCTATCCATTCAGCCGTACCATCATTTTCGATGAGGTCGCCAGAGGGATGCATCCATTACAAGTCCGTCGCTTGAGAACAATTCTCATGCGAGAATCAAGAAACAGAAGAAAGTGTATCATAACCACGACACATTCGTCGGAAATGGTAGAAGTTGAAAGAATCAACCTAATTTGGAGGTTCCAAGTTCTTCCATCAGGCTATTGCCAAATAAGGCGTGTCAAGTCACATTACAACGTCAGAGATTTGCATTTCATTGGTGGAGCTGAAGTGAGGGAGATATTTTTTGCGCGATACATAGTTTGGGTCGAGGGGGAAAGTGACAAGAGGTTCATTCAGGCGTTGCTGAGGATGTTTGATGAAGGAAACCCGGAGCTCCTTAAAGCCCTGTCAGAGCCTGGGGCAGCTACAACCGGAGGCACAGATGGTGAACATTCACCGAGGAATGGTACAGATCTATCTGTAGCTGTAGAAAACCTGTTGCAAGATCCTGCTTACAAAAGAAAGTATTACACCAAAGACGTCCTATCCACCATCCAAGAAGCCGTCCGCAGCTGTATTGTGCTGTCAATCAGCGGCAAGAAAAATGTCTACAAAGCTACAGCAATATGTAATGATCTGGGCATTCCACATGCTGTGGTATGTGACTTAGATGTTATTATCCCCAACTCAAAGGAGAATTCAGTTCAGTCTCAATTCAACAACTGCAGTGGACTATGGACTAGCGCAACCATTTCTAATGCCAAGGCAAAGCTTTTGGATGAAGAACAATGCCCTGCGTCAAAGTGCGTTCAAGACTCAAGTCCTGAGTTGATACCGAAATTGCGCGCATGTAGAACAGTGGGCGAAGTCATGAAGTTTTATGACGAAAAGCAGCGTGTATTTACATGGCGTGTAGATGGTGGTGAAATAGAAGATGCAATTAGATTGACCAAGTCACAGTTTGGAAAGAAATTGTGGCCTGATCTATCCTTTGGAGATATTAAAGACCTTGTTCTTTGCTTATTGCAACCACGTAAGCTACGAGAAAGGAATCCAAAGGACAAAGACGCCACAAAGCAACCAAATCCAGAGCTCCTAAGATGTATTTTCTTCCTCATTCATTTTTTAAGGGATAGTTTGAAATCGAATTAG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011498 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13304 all species →	AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR050388 all species →	Family	ABC Transporter, Nickel and Peptide Import	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43297 all species →	OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap12.1711.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.