Genomic Location: Ap12:18037209...18052720
NR annotation: XP_020600839.1, alpha-L-iduronidase-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap12.1721 |
| Transcript |
| evm.model.Ap12.1721 |
| Protein |
| evm.model.Ap12.1721 |
| UniProt accession | Description |
|---|---|
| P48441 | Alpha-L-iduronidase OS=Mus musculus OX=10090 GN=Idua PE=1 SV=2 |
| P35475 | Alpha-L-iduronidase OS=Homo sapiens OX=9606 GN=IDUA PE=1 SV=2 |
| Q01634 | Alpha-L-iduronidase OS=Canis lupus familiaris OX=9615 GN=IDUA PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007691 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01229 all species → | Glyco_hydro_39 | Glycosyl hydrolases family 39 | Family | Interproscan |
| PF21200 all species → | Glyco_hydro_39_C | Alpha-L-iduronidase C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR049166 all species → | Domain | Glycosyl hydrolases family 39, N-terminal catalytic domain | Interproscan |
| IPR051923 all species → | Family | Glycosyl Hydrolase Family 39 | Interproscan |
| IPR000514 all species → | Family | Glycoside hydrolase, family 39 | Interproscan |
| IPR003961 all species → | Domain | Fibronectin type III | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR036116 all species → | Homologous_superfamily | Fibronectin type III superfamily | Interproscan |
| IPR017853 all species → | Homologous_superfamily | Glycoside hydrolase superfamily | Interproscan |
| IPR049167 all species → | Domain | Alpha-L-iduronidase, C-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12631 all species → | ALPHA-L-IDURONIDASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004553 all species → | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds | Interproscan |
| GO:0005975 all species → | Biological Process | carbohydrate metabolic process | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01217 | IDUA; L-iduronidase | EC:3.2.1.76 | Lysosome | ko04142 | deepkoala |
Transcript abundance of evm.model.Ap12.1721 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
