Gene detail

Detailed information of evm.model.Ap12.1723 in Astrangia poculata

Genomic Location: Ap12:18065181...18075394
NR annotation: XP_022780666.1, twinkle protein, mitochondrial-like isoform X1 [Stylophora pistillata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZIW1	Twinkle mtDNA helicase OS=Gallus gallus OX=9031 GN=TWNK PE=2 SV=1
Q8CIW5	Twinkle mtDNA helicase OS=Mus musculus OX=10090 GN=Twnk PE=2 SV=1
Q96RR1	Twinkle mtDNA helicase OS=Homo sapiens OX=9606 GN=TWNK PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005193 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13481 all species →	AAA_25	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034154 all species →	Domain	Archaeal primase DnaG/twinkle-like, TOPRIM domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR007694 all species →	Domain	DNA helicase, DnaB-like, C-terminal	Interproscan
IPR027032 all species →	Family	Twinkle-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12873 all species →	T7-LIKE MITOCHONDRIAL DNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006264 all species →	Biological Process	mitochondrial DNA replication	Interproscan
GO:0043139 all species →	Molecular Function	5'-3' DNA helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12823	DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2	EC:5.6.2.7	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.