Genomic Location: Ap12:18604654...18631029
NR annotation: KAJ7360065.1, Liprin-alpha-1 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap12.1768 |
| Transcript |
| evm.model.Ap12.1768 |
| Protein |
| evm.model.Ap12.1768 |
| UniProt accession | Description |
|---|---|
| Q13136 | Liprin-alpha-1 OS=Homo sapiens OX=9606 GN=PPFIA1 PE=1 SV=1 |
| O75334 | Liprin-alpha-2 OS=Homo sapiens OX=9606 GN=PPFIA2 PE=1 SV=2 |
| Q8BSS9 | Liprin-alpha-2 OS=Mus musculus OX=10090 GN=Ppfia2 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003627 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07647 all species → | SAM_2 | SAM domain (Sterile alpha motif) | Domain | Interproscan |
| PF00536 all species → | SAM_1 | SAM domain (Sterile alpha motif) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013761 all species → | Homologous_superfamily | Sterile alpha motif/pointed domain superfamily | Interproscan |
| IPR029515 all species → | Family | LAR-interacting protein, Liprin | Interproscan |
| IPR001660 all species → | Domain | Sterile alpha motif domain | Interproscan |
| IPR037621 all species → | Domain | Liprin-alpha, SAM domain repeat 2 | Interproscan |
| IPR037620 all species → | Domain | Liprin-alpha, SAM domain repeat 1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12587 all species → | LAR INTERACTING PROTEIN LIP -RELATED PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0048786 all species → | Cellular Component | presynaptic active zone | Interproscan |
| GO:0050808 all species → | Biological Process | synapse organization | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K26226 | PPFIA; liprin-alpha | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of evm.model.Ap12.1768 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
