Gene detail

Detailed information of evm.model.Ap12.1794 in Astrangia poculata

Genomic Location: Ap12:18922470...18927258
NR annotation: XP_020605658.1, multidrug resistance-associated protein 4-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.1794

atgaacgcagagcgtgagtatggcgtccccacacatccacagaggaaggccaacttgatctcttttcttctgttctggtggacaaatgatttgttcaggactggaaaccagcgtcccttgcaacaatctgacttctggccattgcacgaggaagacaaaacgtccctactgacaaaagaactgcagtcacagtggaataaagatctgaatgagtgcaaactaacagggaaagaaccaaggctatggaaaagtgctatgaaagttctgtcttgtaaggacctctgtataatttcttttgccggactactggactcagtgggtcgatttcttcagccatttttcctaggaatttttatctctgcacttaaggccaaagctcctgagagaggcttgctttgtggttgcgctgcgctgatgctgttgattgtgctgatgaagagcattgctgtacatcatagcagcttcaaactgtacgtgattgggatgaggatgaaggcctcccttaaaggtgtcatcttcagaaagatcctggtccttggtcagcataccctcaacgagtttacaaaaggtcacgtgattgatctggtgtccaatgatgttcagagaatggaacaggccgccaggcagttctttcgcctccttgtcgccatctttgatgtttgtgtagctgttccgttgttatggtacttcattggttggcaggcattaatgggaatcgtcttcttgttttttcttgtgccatttggtggttttctgtcttacttgtctggaaagcttcgactgaagaccgctgtcattactgatcggcgaataaatttgatgactgagatagtggctggaattcgtgaagtgaagacgcatgcgtgggagtggttctttaaagatcagatcaaagatactcgaagcgatgagatgagaataattcgtcgcaagagcattcttctgtcatgtgccatatctctcatgtattcctcgggacttgttgcctccttcatttctattttggcgcttgcctttagtggttatcacctaacacctttcatcgtttttacgctcttgtcaattatcaacgtcctccgaaacagtgcactgagatcaataggagagggatcacagtttatatacgaagcgtacgtttcatttgatagaatacaagaatttctgctgctgccaaaccttaatggtatgactgatacaaaactctcaaccaatacgggcagcaactcattgctaaagacaaaatgttttggaaaggaagaggtgaacattaaggaccaatacgtatgtttacaccagtctttgaagaaaacctcgaccataaccaagtttttagacattacagataacatcaatctatatcccttccttggaactacgaatctgggtcatcttatgagcccaacggacaaactgcaaattatagagcaagggcaatttgaggaaaaaagagagagaatgatcaagttgagcaatgtaatctgcaaactaaatgttgacaacaaatgccctgtaaaatctatcaactttgaagcaaaagatggaagctttgctatcatcactggtccagtggggagtggaaaatcaatcatgctgtctgtgatcgctggtgagataccagttactgaagggaatgtccaatgcggtggtaccattgcctacgtgccacagatgccttgggttttctctggaacactgagagagaacatcctcttcggtcggccatttgatttcgataagtacgcccaaactatcagagtttgcgctttagaggaagacattaagggatttccaggtaaagaccaagtagttgttggagaacgaggcgacactttgagtggtggtcagcagattcgcgtcagtttggcgcgggcagtctatgccgattgtgatatttacctgttggacaatccactcgctgcactcgatataaacgttagtgattacatttttaaacattgtatacttggcttgctgaaaaacaaagttcgtttgatggtttctcaccaagagtctcatatgaagcttgcagatcaagtaattgttttgcaaaacggtacagtgactgataaagggacgtttttggcacttaatgaaaaagaagcactaaaagaaattatagaacctcaaaacaaagtagctcaggaaacaactttatctcaggaacaaatcacaaatactaaagtacattggccagacaagaagatggttaaaagcatggaaattcccgaggaggaccgtatgattggtgcagtgtcctgcaagctgtactgggattatctaaaagcaggggtgcatcccatcgctttagctggcttggttctcattttcctcctttgtcaaggtaaggctcgaggaacaattttaatttatgatgccatcatgccaaaccaaccctttagacccggggaagagtaa

Transcript

evm.model.Ap12.1794

ATGAACGCAGAGCGTGAGTATGGCGTCCCCACACATCCACAGAGGAAGGCCAACTTGATCTCTTTTCTTCTGTTCTGGTGGACAAATGATTTGTTCAGGACTGGAAACCAGCGTCCCTTGCAACAATCTGACTTCTGGCCATTGCACGAGGAAGACAAAACGTCCCTACTGACAAAAGAACTGCAGTCACAGTGGAATAAAGATCTGAATGAGTGCAAACTAACAGGGAAAGAACCAAGGCTATGGAAAAGTGCTATGAAAGTTCTGTCTTGTAAGGACCTCTGTATAATTTCTTTTGCCGGACTACTGGACTCAGTGGGTCGATTTCTTCAGCCATTTTTCCTAGGAATTTTTATCTCTGCACTTAAGGCCAAAGCTCCTGAGAGAGGCTTGCTTTGTGGTTGCGCTGCGCTGATGCTGTTGATTGTGCTGATGAAGAGCATTGCTGTACATCATAGCAGCTTCAAACTGTACGTGATTGGGATGAGGATGAAGGCCTCCCTTAAAGGTGTCATCTTCAGAAAGATCCTGGTCCTTGGTCAGCATACCCTCAACGAGTTTACAAAAGGTCACGTGATTGATCTGGTGTCCAATGATGTTCAGAGAATGGAACAGGCCGCCAGGCAGTTCTTTCGCCTCCTTGTCGCCATCTTTGATGTTTGTGTAGCTGTTCCGTTGTTATGGTACTTCATTGGTTGGCAGGCATTAATGGGAATCGTCTTCTTGTTTTTTCTTGTGCCATTTGGTGGTTTTCTGTCTTACTTGTCTGGAAAGCTTCGACTGAAGACCGCTGTCATTACTGATCGGCGAATAAATTTGATGACTGAGATAGTGGCTGGAATTCGTGAAGTGAAGACGCATGCGTGGGAGTGGTTCTTTAAAGATCAGATCAAAGATACTCGAAGCGATGAGATGAGAATAATTCGTCGCAAGAGCATTCTTCTGTCATGTGCCATATCTCTCATGTATTCCTCGGGACTTGTTGCCTCCTTCATTTCTATTTTGGCGCTTGCCTTTAGTGGTTATCACCTAACACCTTTCATCGTTTTTACGCTCTTGTCAATTATCAACGTCCTCCGAAACAGTGCACTGAGATCAATAGGAGAGGGATCACAGTTTATATACGAAGCGTACGTTTCATTTGATAGAATACAAGAATTTCTGCTGCTGCCAAACCTTAATGGTATGACTGATACAAAACTCTCAACCAATACGGGCAGCAACTCATTGCTAAAGACAAAATGTTTTGGAAAGGAAGAGGTGAACATTAAGGACCAATACGTATGTTTACACCAGTCTTTGAAGAAAACCTCGACCATAACCAAGTTTTTAGACATTACAGATAACATCAATCTATATCCCTTCCTTGGAACTACGAATCTGGGTCATCTTATGAGCCCAACGGACAAACTGCAAATTATAGAGCAAGGGCAATTTGAGGAAAAAAGAGAGAGAATGATCAAGTTGAGCAATGTAATCTGCAAACTAAATGTTGACAACAAATGCCCTGTAAAATCTATCAACTTTGAAGCAAAAGATGGAAGCTTTGCTATCATCACTGGTCCAGTGGGGAGTGGAAAATCAATCATGCTGTCTGTGATCGCTGGTGAGATACCAGTTACTGAAGGGAATGTCCAATGCGGTGGTACCATTGCCTACGTGCCACAGATGCCTTGGGTTTTCTCTGGAACACTGAGAGAGAACATCCTCTTCGGTCGGCCATTTGATTTCGATAAGTACGCCCAAACTATCAGAGTTTGCGCTTTAGAGGAAGACATTAAGGGATTTCCAGGTAAAGACCAAGTAGTTGTTGGAGAACGAGGCGACACTTTGAGTGGTGGTCAGCAGATTCGCGTCAGTTTGGCGCGGGCAGTCTATGCCGATTGTGATATTTACCTGTTGGACAATCCACTCGCTGCACTCGATATAAACGTTAGTGATTACATTTTTAAACATTGTATACTTGGCTTGCTGAAAAACAAAGTTCGTTTGATGGTTTCTCACCAAGAGTCTCATATGAAGCTTGCAGATCAAGTAATTGTTTTGCAAAACGGTACAGTGACTGATAAAGGGACGTTTTTGGCACTTAATGAAAAAGAAGCACTAAAAGAAATTATAGAACCTCAAAACAAAGTAGCTCAGGAAACAACTTTATCTCAGGAACAAATCACAAATACTAAAGTACATTGGCCAGACAAGAAGATGGTTAAAAGCATGGAAATTCCCGAGGAGGACCGTATGATTGGTGCAGTGTCCTGCAAGCTGTACTGGGATTATCTAAAAGCAGGGGTGCATCCCATCGCTTTAGCTGGCTTGGTTCTCATTTTCCTCCTTTGTCAAGGTAAGGCTCGAGGAACAATTTTAATTTATGATGCCATCATGCCAAACCAACCCTTTAGACCCGGGGAAGAGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P91660	Probable multidrug resistance-associated protein lethal(2)03659 OS=Drosophila melanogaster OX=7227 GN=l(2)03659 PE=2 SV=4
Q00552	Cystic fibrosis transmembrane conductance regulator OS=Cavia porcellus OX=10141 GN=CFTR PE=2 SV=2
Q2IBB3	Cystic fibrosis transmembrane conductance regulator OS=Rhinolophus ferrumequinum OX=59479 GN=CFTR PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000027 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan
PF00664 all species →	ABC_membrane	ABC transporter transmembrane region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR044746 all species →	Domain	ABC transporter C family, six-transmembrane helical domain 1	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR050173 all species →	Family	ATP-binding cassette transporter C	Interproscan
IPR011527 all species →	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR036640 all species →	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24223 all species →	ATP-BINDING CASSETTE SUB-FAMILY C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0140359 all species →	Molecular Function	ABC-type transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0042626 all species →	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap12.1794.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.