Detailed information of evm.model.Ap12.1856 in Astrangia poculata

Genomic Location: Ap12:19523385...19524638
NR annotation: CAH3107496.1, unnamed protein product, partial [Porites lobata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A2XED8Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1
Q941W1Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1
Q9FGH2Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 OS=Arabidopsis thaliana OX=3702 GN=LSH5 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000274 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00589
all species →		Phage_integrasePhage integrase familyFamilyInterproscan
PF04852
all species →		ALOG_domALOG domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006936
all species →		DomainALOG domainInterproscan
IPR002104
all species →		DomainIntegrase, catalytic domainInterproscan
IPR040222
all species →		FamilyALOG familyInterproscan
IPR013762
all species →		Homologous_superfamilyIntegrase-like, catalytic domain superfamilyInterproscan
IPR011010
all species →		Homologous_superfamilyDNA breaking-rejoining enzyme, catalytic coreInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31165
all species →		PROTEIN G1-LIKE2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0006310
all species →		Biological ProcessDNA recombinationInterproscan
GO:0015074
all species →		Biological ProcessDNA integrationInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0009299
all species →		Biological ProcessmRNA transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap12.1856.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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