Gene detail

Detailed information of evm.model.Ap12.1930 in Astrangia poculata

Genomic Location: Ap12:20236556...20240428
NR annotation: KAJ7373584.1, hypothetical protein OS493_011189 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q21109	Endoribonuclease endu-1 OS=Caenorhabditis elegans OX=6239 GN=endu-1 PE=1 SV=1
A8E624	Uridylate-specific endoribonuclease C OS=Xenopus laevis OX=8355 GN=endou-c PE=2 SV=1
A8E627	Uridylate-specific endoribonuclease D OS=Xenopus laevis OX=8355 GN=endou-d PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001018 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09412 all species →	XendoU	Endoribonuclease XendoU	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018998 all species →	Domain	EndoU ribonuclease, C-terminal	Interproscan
IPR037227 all species →	Homologous_superfamily	Endoribonuclease EndoU-like	Interproscan
IPR039787 all species →	Family	Poly(U)-specific endoribonuclease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12439 all species →	PLACENTAL PROTEIN 11-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14648	ENDOU, PP11; poly(U)-specific endoribonuclease	EC:3.1.-.-	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.