Detailed information of evm.model.Ap12.1931 in Astrangia poculata

Genomic Location: Ap12:20243477...20245902
NR annotation: XP_020600557.1, uncharacterized protein LOC110039747 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A9AGH3Kynurenine formamidase OS=Burkholderia multivorans (strain ATCC 17616 / 249) OX=395019 GN=kynB PE=3 SV=1
Q2KXW3Kynurenine formamidase OS=Bordetella avium (strain 197N) OX=360910 GN=kynB PE=3 SV=1
A4JHD7Kynurenine formamidase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) OX=269482 GN=kynB PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001409 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04199
all species →		CyclasePutative cyclaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR037175
all species →		Homologous_superfamilyKynurenine formamidase superfamilyInterproscan
IPR007325
all species →		FamilyKynurenine formamidase/cyclase-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31118
all species →		CYCLASE-LIKE PROTEIN 2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004061
all species →		Molecular Functionarylformamidase activityInterproscan
GO:0019441
all species →		Biological Processtryptophan catabolic process to kynurenineInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap12.1931.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap12.1931 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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