Detailed information of evm.model.Ap12.1953 in Astrangia poculata

Genomic Location: Ap12:20497941...20499449
NR annotation: KAJ7373565.1, hypothetical protein OS493_011168 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P29054Transcription initiation factor IIB OS=Xenopus laevis OX=8355 GN=gtf2b PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0010151 (this species only)

 Pfam domain
No Pfam domain signature was detected for evm.model.Ap12.1953. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR000812
all species →		FamilyTranscription factor TFIIBInterproscan
IPR013137
all species →		DomainZinc finger, TFIIB-typeInterproscan
IPR036915
all species →		Homologous_superfamilyCyclin-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11618
all species →		TRANSCRIPTION INITIATION FACTOR IIB-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006352
all species →		Biological ProcessDNA-templated transcription initiationInterproscan
GO:0070897
all species →		Biological Processtranscription preinitiation complex assemblyInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0017025
all species →		Molecular FunctionTBP-class protein bindingInterproscan
GO:0097550
all species →		Cellular Componenttranscription preinitiation complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap12.1953.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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