Detailed information of evm.model.Ap12.1975 in Astrangia poculata

Genomic Location: Ap12:20654205...20663436
NR annotation: XP_020603932.1, transmembrane protein 53-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q4R764Synaptonemal complex protein 3 OS=Macaca fascicularis OX=9541 GN=SYCP3 PE=2 SV=1
Q8IZU3Synaptonemal complex protein 3 OS=Homo sapiens OX=9606 GN=SYCP3 PE=1 SV=1
P70281Synaptonemal complex protein 3 OS=Mus musculus OX=10090 GN=Sycp3 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0009684 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04803
all species →		Cor1Cor1/Xlr/Xmr conserved regionCoiled-coilInterproscan
PF05705
all species →		DUF829Eukaryotic protein of unknown function (DUF829)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029058
all species →		Homologous_superfamilyAlpha/Beta hydrolase foldInterproscan
IPR006888
all species →		DomainXLR/SYCP3/FAM9 domainInterproscan
IPR008547
all species →		FamilyProtein of unknown function DUF829, TMEM53Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR20908
all species →		LD15586PInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0017171
all species →		Molecular Functionserine hydrolase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap12.1975.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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