Detailed information of evm.model.Ap12.1993 in Astrangia poculata

Genomic Location: Ap12:20826651...20827910
NR annotation: KAJ7373516.1, hypothetical protein OS493_011115 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9IB89Zinc finger protein ZIC 5 OS=Xenopus laevis OX=8355 GN=zic5 PE=2 SV=1
Q15915Zinc finger protein ZIC 1 OS=Homo sapiens OX=9606 GN=ZIC1 PE=1 SV=2
P46684Zinc finger protein ZIC 1 OS=Mus musculus OX=10090 GN=Zic1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001009 (this species only)
Transcription factor familyzf-C2H2 · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF18366
all species →		zf_ZICZic proteins zinc finger domainDomainInterproscan
PF00096
all species →		zf-C2H2Zinc finger, C2H2 typeDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013087
all species →		DomainZinc finger C2H2-typeInterproscan
IPR036236
all species →		Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR041643
all species →		DomainZIC protein, zinc finger domainInterproscan
IPR050329
all species →		FamilyGLI C2H2-type zinc-fingerInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19818
all species →		ZINC FINGER PROTEIN ZIC AND GLIInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap12.1993.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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