Gene detail

Detailed information of evm.model.Ap12.2019 in Astrangia poculata

Genomic Location: Ap12:21143975...21151186
NR annotation: XP_022785031.1, integumentary mucin C.1-like [Stylophora pistillata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q863B4	Trefoil factor 3 OS=Canis lupus familiaris OX=9615 GN=TFF3 PE=3 SV=1
A8YXX7	Trefoil factor 3 OS=Bos taurus OX=9913 GN=TFF3 PE=3 SV=1
Q03191	Trefoil factor 3 OS=Rattus norvegicus OX=10116 GN=Tff3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001045 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00088 all species →	Trefoil	Trefoil (P-type) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000519 all species →	Domain	P-type trefoil domain	Interproscan
IPR044913 all species →	Homologous_superfamily	P-type trefoil domain superfamily	Interproscan
IPR017994 all species →	Family	P-type trefoil, chordata	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13826 all species →	INTESTINAL TREFOIL FACTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22453	TFF2; trefoil factor 2	-	Structural proteins	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.