Genomic Location: Ap12:21338178...21360728
NR annotation: XP_015760847.1, PREDICTED: uncharacterized protein LOC107340009 [Acropora digitifera]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap12.2034 |
| Transcript |
| evm.model.Ap12.2034 |
| Protein |
| evm.model.Ap12.2034 |
| UniProt accession | Description |
|---|---|
| P21128 | Uridylate-specific endoribonuclease OS=Homo sapiens OX=9606 GN=ENDOU PE=1 SV=2 |
| Q3V188 | Uridylate-specific endoribonuclease OS=Mus musculus OX=10090 GN=Endou PE=2 SV=1 |
| A6QLQ8 | Uridylate-specific endoribonuclease OS=Bos taurus OX=9913 GN=ENDOU PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000580 (this species only) |
| Ubiquitin family | E3|E3 activity|HECT · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00632 all species → | HECT | HECT-domain (ubiquitin-transferase) | Domain | Interproscan |
| PF09412 all species → | XendoU | Endoribonuclease XendoU | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR037227 all species → | Homologous_superfamily | Endoribonuclease EndoU-like | Interproscan |
| IPR000519 all species → | Domain | P-type trefoil domain | Interproscan |
| IPR035983 all species → | Homologous_superfamily | HECT, E3 ligase catalytic domain | Interproscan |
| IPR039787 all species → | Family | Poly(U)-specific endoribonuclease | Interproscan |
| IPR000569 all species → | Domain | HECT domain | Interproscan |
| IPR018998 all species → | Domain | EndoU ribonuclease, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12439 all species → | PLACENTAL PROTEIN 11-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004842 all species → | Molecular Function | ubiquitin-protein transferase activity | Interproscan |
| GO:0004521 all species → | Molecular Function | RNA endonuclease activity | Interproscan |
evm.model.Ap12.2034.Transcript abundance of evm.model.Ap12.2034 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
