Detailed information of evm.model.Ap12.2080 in Astrangia poculata

Genomic Location: Ap12:21898053...21909014
NR annotation: CAH3156658.1, unnamed protein product [Porites lobata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q96RW7Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2
D3YXG0Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1
B3EWY9Mucin-like protein (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000019 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00090
all species →		TSP_1Thrombospondin type 1 domainDomainInterproscan
PF00008
all species →		EGFEGF-like domainDomainInterproscan
PF00088
all species →		TrefoilTrefoil (P-type) domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000884
all species →		RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR018097
all species →		Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR000519
all species →		DomainP-type trefoil domainInterproscan
IPR036383
all species →		Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR044913
all species →		Homologous_superfamilyP-type trefoil domain superfamilyInterproscan
IPR013273
all species →		FamilyADAMTS/ADAMTS-likeInterproscan
IPR003609
all species →		DomainPAN/Apple domainInterproscan
IPR001881
all species →		DomainEGF-like calcium-binding domainInterproscan
IPR000152
all species →		PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR052065
all species →		FamilyComplement and asymmetry regulatorInterproscan
IPR017957
all species →		Conserved_siteP-type trefoil, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22906
all species →		PROPERDINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan
GO:0030198
all species →		Biological Processextracellular matrix organizationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap12.2080.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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