Gene detail

Detailed information of evm.model.Ap12.213 in Astrangia poculata

Genomic Location: Ap12:1957517...1958273
NR annotation: XP_020626557.1, autophagy-related protein 101-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4IH75	Autophagy-related protein 101 OS=Xenopus tropicalis OX=8364 GN=atg101 PE=2 SV=1
Q6DE58	Autophagy-related protein 101 OS=Xenopus laevis OX=8355 GN=atg101 PE=2 SV=1
Q2HJE0	Autophagy-related protein 101 OS=Bos taurus OX=9913 GN=ATG101 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009426 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07855 all species →	ATG101	Autophagy-related protein 101	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012445 all species →	Family	Autophagy-related protein 101	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13292 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000045 all species →	Biological Process	autophagosome assembly	Interproscan
GO:0000407 all species →	Cellular Component	phagophore assembly site	Interproscan
GO:0006914 all species →	Biological Process	autophagy	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19730	ATG101; autophagy-related protein 101	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap12.213 across 49 RNA-seq samples of Astrangia poculata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples

27TPM > 0

4Conditions

1,030.1Max TPM

172.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organism · cold control	14	10	192.14	683.77
whole organism · heat control	12	7	149.85	381.30
whole organism · cold challenge	12	8	221.54	623.40
whole organism · heat challenge	11	2	118.17	1,030.11

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR10674724	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	683.77
SRR10674733	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	604.99
SRR10674715	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	266.61
SRR10674747	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	248.53
SRR10674750	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	219.76
SRR10674748	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	199.51
SRR10674736	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	138.67
SRR10674735	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	135.22
SRR10674746	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	115.16
SRR10674739	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	77.70
SRR10674714	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674734	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674737	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674743	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674725	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	381.30
SRR10674731	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	339.99
SRR10674720	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	277.32
SRR10674721	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	261.73
SRR10674706	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	247.69
SRR10674717	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	192.20
SRR10674753	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	97.94
SRR10674707	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674708	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674718	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674741	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674752	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674722	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	623.40
SRR10674749	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	552.44
SRR10674730	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	425.32
SRR10674738	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	307.99
SRR10674711	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	264.59
SRR10674723	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	193.12
SRR10674712	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	157.11
SRR10674713	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	134.47
SRR10674732	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674740	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674744	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674745	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674716	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	1,030.11
SRR10674726	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	269.78
SRR10674709	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674710	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674719	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674727	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674728	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674729	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674742	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674751	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674754	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.