Genomic Location: Ap12:22845826...22863983
NR annotation: XP_022778936.1, cysteine--tRNA ligase, cytoplasmic-like isoform X1 [Stylophora pistillata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap12.2176 |
| Transcript |
| evm.model.Ap12.2176 |
| Protein |
| evm.model.Ap12.2176 |
| UniProt accession | Description |
|---|---|
| Q5F408 | Cysteine--tRNA ligase, cytoplasmic OS=Gallus gallus OX=9031 GN=CARS1 PE=2 SV=1 |
| Q5M7N8 | Cysteine--tRNA ligase, cytoplasmic OS=Xenopus tropicalis OX=8364 GN=cars1 PE=2 SV=1 |
| Q4R550 | Cysteine--tRNA ligase, cytoplasmic OS=Macaca fascicularis OX=9541 GN=CARS1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002378 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01406 all species → | tRNA-synt_1e | tRNA synthetases class I (C) catalytic domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR014729 all species → | Homologous_superfamily | Rossmann-like alpha/beta/alpha sandwich fold | Interproscan |
| IPR009080 all species → | Homologous_superfamily | Aminoacyl-tRNA synthetase, class Ia, anticodon-binding | Interproscan |
| IPR032678 all species → | Domain | tRNA synthetases class I, catalytic domain | Interproscan |
| IPR024909 all species → | Family | Cysteinyl-tRNA synthetase/mycothiol ligase | Interproscan |
| IPR015803 all species → | Family | Cysteine-tRNA ligase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10890 all species → | CYSTEINYL-TRNA SYNTHETASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000166 all species → | Molecular Function | nucleotide binding | Interproscan |
| GO:0004812 all species → | Molecular Function | aminoacyl-tRNA ligase activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006418 all species → | Biological Process | tRNA aminoacylation for protein translation | Interproscan |
| GO:0004817 all species → | Molecular Function | cysteine-tRNA ligase activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006423 all species → | Biological Process | cysteinyl-tRNA aminoacylation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01883 | CARS, cysS; cysteinyl-tRNA synthetase | EC:6.1.1.16 | Transfer RNA biogenesis | ko03016 | deepkoala |
Transcript abundance of evm.model.Ap12.2176 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
