Gene detail

Detailed information of evm.model.Ap12.2208 in Astrangia poculata

Genomic Location: Ap12:23220571...23239171
NR annotation: XP_020605706.1, low-density lipoprotein receptor-related protein 6-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.2208

atggaacttttgcctcgtcttcttatcgctctgctagctctgtgcatcactccatccgtttttacgttcacagcctattctgtgaggcttttatacgccaaccgaaaggatataagaatctttgggacgagcagccaggaccagaatgaaactatagtagtgaatggccttgaagatgccatcgctgtgaatttctgctttgcggaaggatttgtgttttggaccgatgttagcttggataaaatcaagcgaattcgtgtgacaggaaatacaagaagagtcgaggatgtgatctcggtgggtttgaagaaacccgagggattggctgtagattggatagcgaaaaagttgtattggactgacggtgaagattctgactgggaaacgaatataattgaagttgcaaattttgatggatcttatcgaaaagttcttttctggaaagacttgggacttccaagggctattgccgtggatccgctcaaagggttcatgttttggacagactggggtgaacaacccaaaatagagcgagccgaaatggacggctccaaccgtggagtaataatcagacaggatattcattggcccaatgggctaacaatagactacagtacagagaaaatatactggactgatgcaaaattgttttatatagctaaagctaattatgatggttcgaaacgtcagagaatatttagaactccaatgcccagtcaatgtgttttgggtcatccgtttgctttgacattatatgagaacaaaatttattggactgattggaaaaccagaggcattcactctacgaacaagaatactagtacacggtgtcaaatggttcggtcaaatgttcattctccgatggatattcatgcatttggacccaaaagacaattgccgaggcctggtcctaacccctgtaatttcaccaccaatggaggatgcagccatttatgtttgttgaatattcgcagtcactcatgtgcatgcccgaccggtgtgaagctcttgtcggatgggaaaacatgcgaggaaggtcctgtacatttcttattgctggcaaggaaagaggacctgcgttgcatatcgctcgacacacctgatcttacggatgtagttgtgccagtttctggtatcaaacatgcagtcgccattgattttgatccagttgataaatttgtttactggagcgatgatgaaaaacttgaaataaagagatgccgaatgaatggacaagatgtcgaggtcatagtttcaagtgaagttaaacatcctgatggcatcgcagttgactgggtggcgcggaacttgtactggacagacactggtactgataggattgaagtcagcaggctgaatggctcgtcaagaaaagttcttattagtgaaaatctggatgaacctagagcgatagtattggatccaactcgtgggcacatgtactggactgactggggaaggcagccaaggattgaacgagcaggacttgatggaagtcaccgcatcaccttggttaactcatccatagggtggcctaatggtattgccattgattaccttgatggcaaaatctactgggctgacgccaagctggacaagatcgaggtcatgcatttggatgggagtaatcgcagagtagttctggatagaaaactgctacacatctttggttttactgttcttggtgatcgcctatattggacagactggcagagaaaggctatagaaagtgcgaacaaaagaaccggcagcgacagacaaatcatcattggcagtgtgcctgatttgatgggattgaagggtgtcaaccttaacctaacttatggttctaatacctgccagcgtaacaatggtgaatgtagtcatctgtgtttattcaggccttcgggagctaagtgcgaatgcccaacagggatggagctgcttgctaacaagaaaacttgtatccctctcaagacatgtggaccagaagagtttgcttgttccgatggaacttgcttgaggaaaacctggctttgtgatgaccgtcaggactgcattgatggcagtgacgaaaagaattgcacattgaaatgtcagaaggaccattttggatgtgttgataatcatattgttattaagtgcattgcactggactgggtgtgcgatgcaccctgtaaagaaggagaacatcggtgtagtggaggcaagtgcatcagtgtaaagaaactgtgtgacaatgtacaagattgtgatgacgcatcagacgagtatgaggacaattgcccattgaagtgtaagaaaaaccagtttggttgtgttgataatcatatcgttattaattgcattccactggattgggtgtgcgatggttcgatggactgcgctgacaacgcagatgaaatcgattgcccttctcaagtagtggtagtggtagtggtagtggtagtggtagtggtagtggtagtggtagtggtagtggtagtggtagtggtagtggtagtggtagtggtagtggtagtggttggtagtggtagtggtagtggtagtggtagtggcggtggcggtggcggtggcggtggcggtggcggtggcggtggcggtggcggtggcggtggcggtggcggtggcggtggcggtggcggtggcggtggcggtggcggtggcggtggcggtggcggtggcggtggcggtggcggtggcggtggcggtggcggtggcggtggcggtggcggtggcgtggcgtggctggcggtggcgcg

Transcript

evm.model.Ap12.2208

ATGGAACTTTTGCCTCGTCTTCTTATCGCTCTGCTAGCTCTGTGCATCACTCCATCCGTTTTTACGTTCACAGCCTATTCTGTGAGGCTTTTATACGCCAACCGAAAGGATATAAGAATCTTTGGGACGAGCAGCCAGGACCAGAATGAAACTATAGTAGTGAATGGCCTTGAAGATGCCATCGCTGTGAATTTCTGCTTTGCGGAAGGATTTGTGTTTTGGACCGATGTTAGCTTGGATAAAATCAAGCGAATTCGTGTGACAGGAAATACAAGAAGAGTCGAGGATGTGATCTCGGTGGGTTTGAAGAAACCCGAGGGATTGGCTGTAGATTGGATAGCGAAAAAGTTGTATTGGACTGACGGTGAAGATTCTGACTGGGAAACGAATATAATTGAAGTTGCAAATTTTGATGGATCTTATCGAAAAGTTCTTTTCTGGAAAGACTTGGGACTTCCAAGGGCTATTGCCGTGGATCCGCTCAAAGGGTTCATGTTTTGGACAGACTGGGGTGAACAACCCAAAATAGAGCGAGCCGAAATGGACGGCTCCAACCGTGGAGTAATAATCAGACAGGATATTCATTGGCCCAATGGGCTAACAATAGACTACAGTACAGAGAAAATATACTGGACTGATGCAAAATTGTTTTATATAGCTAAAGCTAATTATGATGGTTCGAAACGTCAGAGAATATTTAGAACTCCAATGCCCAGTCAATGTGTTTTGGGTCATCCGTTTGCTTTGACATTATATGAGAACAAAATTTATTGGACTGATTGGAAAACCAGAGGCATTCACTCTACGAACAAGAATACTAGTACACGGTGTCAAATGGTTCGGTCAAATGTTCATTCTCCGATGGATATTCATGCATTTGGACCCAAAAGACAATTGCCGAGGCCTGGTCCTAACCCCTGTAATTTCACCACCAATGGAGGATGCAGCCATTTATGTTTGTTGAATATTCGCAGTCACTCATGTGCATGCCCGACCGGTGTGAAGCTCTTGTCGGATGGGAAAACATGCGAGGAAGGTCCTGTACATTTCTTATTGCTGGCAAGGAAAGAGGACCTGCGTTGCATATCGCTCGACACACCTGATCTTACGGATGTAGTTGTGCCAGTTTCTGGTATCAAACATGCAGTCGCCATTGATTTTGATCCAGTTGATAAATTTGTTTACTGGAGCGATGATGAAAAACTTGAAATAAAGAGATGCCGAATGAATGGACAAGATGTCGAGGTCATAGTTTCAAGTGAAGTTAAACATCCTGATGGCATCGCAGTTGACTGGGTGGCGCGGAACTTGTACTGGACAGACACTGGTACTGATAGGATTGAAGTCAGCAGGCTGAATGGCTCGTCAAGAAAAGTTCTTATTAGTGAAAATCTGGATGAACCTAGAGCGATAGTATTGGATCCAACTCGTGGGCACATGTACTGGACTGACTGGGGAAGGCAGCCAAGGATTGAACGAGCAGGACTTGATGGAAGTCACCGCATCACCTTGGTTAACTCATCCATAGGGTGGCCTAATGGTATTGCCATTGATTACCTTGATGGCAAAATCTACTGGGCTGACGCCAAGCTGGACAAGATCGAGGTCATGCATTTGGATGGGAGTAATCGCAGAGTAGTTCTGGATAGAAAACTGCTACACATCTTTGGTTTTACTGTTCTTGGTGATCGCCTATATTGGACAGACTGGCAGAGAAAGGCTATAGAAAGTGCGAACAAAAGAACCGGCAGCGACAGACAAATCATCATTGGCAGTGTGCCTGATTTGATGGGATTGAAGGGTGTCAACCTTAACCTAACTTATGGTTCTAATACCTGCCAGCGTAACAATGGTGAATGTAGTCATCTGTGTTTATTCAGGCCTTCGGGAGCTAAGTGCGAATGCCCAACAGGGATGGAGCTGCTTGCTAACAAGAAAACTTGTATCCCTCTCAAGACATGTGGACCAGAAGAGTTTGCTTGTTCCGATGGAACTTGCTTGAGGAAAACCTGGCTTTGTGATGACCGTCAGGACTGCATTGATGGCAGTGACGAAAAGAATTGCACATTGAAATGTCAGAAGGACCATTTTGGATGTGTTGATAATCATATTGTTATTAAGTGCATTGCACTGGACTGGGTGTGCGATGCACCCTGTAAAGAAGGAGAACATCGGTGTAGTGGAGGCAAGTGCATCAGTGTAAAGAAACTGTGTGACAATGTACAAGATTGTGATGACGCATCAGACGAGTATGAGGACAATTGCCCATTGAAGTGTAAGAAAAACCAGTTTGGTTGTGTTGATAATCATATCGTTATTAATTGCATTCCACTGGATTGGGTGTGCGATGGTTCGATGGACTGCGCTGACAACGCAGATGAAATCGATTGCCCTTCTCAAGTAGTGGTAGTGGTAGTGGTAGTGGTAGTGGTAGTGGTAGTGGTAGTGGTAGTGGTAGTGGTAGTGGTAGTGGTAGTGGTAGTGGTAGTGGTAGTGGTAGTGGTTGGTAGTGGTAGTGGTAGTGGTAGTGGTAGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGTGGCGTGGCTGGCGGTGGCGCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75581	Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens OX=9606 GN=LRP6 PE=1 SV=2
O88572	Low-density lipoprotein receptor-related protein 6 OS=Mus musculus OX=10090 GN=Lrp6 PE=1 SV=1
Q91VN0	Low-density lipoprotein receptor-related protein 5 OS=Mus musculus OX=10090 GN=Lrp5 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001295 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14670 all species →	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan
PF00058 all species →	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF00057 all species →	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002172 all species →	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR000033 all species →	Repeat	LDLR class B repeat	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR036055 all species →	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR023415 all species →	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR050778 all species →	Family	Cueball/EGF/LRP/Nidogen	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513 all species →	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap12.2208.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.