Gene detail

Detailed information of evm.model.Ap12.2210 in Astrangia poculata

Genomic Location: Ap12:23253766...23265894
NR annotation: XP_020605706.1, low-density lipoprotein receptor-related protein 6-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.2210

atggaagttttgcctcagcttcttatcactctgctagctctgtgcattactccatcggcctactctcagaggttgttatacgccaatcgaaaagatataagaatctttgggacgagcggccaggaccagaatgaaactatagtagtggatggccttaaagatgccatttctgtggatttctcctttgcggaaggatttgtgttttggaccgatgctagcttgaagaaaatcaagcgaattcgtgtcacagtagaaacaaaaaaagtcgaggatgtgatctctgtgggtttgaggaaacctgagggattggctgtagactggatagcgaaaaagttgtattggactgacagtcaaggttttgactgggaaacgagtaaaattgaagttgcaaattttgatggatcttatcgaaaagttcttttctggaaagacgtgggacttccaagggctattgccgtggatccaatcaaaggtgtcgtgttctggacggactggggtgataaacccaaagtagagagagctgaaatggatggctccaatcgtcaagctatcatccgacaggacatccaatggcccaatgggctgacaatagactacagtacagagaaaatatactggattgatgcaaaattgtattacatagctaaagctaattatgacggttcaaaccgtcataagatattcaaaactcctatgcccagtcaatgtgtattgggtcatccatttgctatgacattatatgagaacaaaatttactggactgattcgaaaaccaaaggcatttactctatggacaagaatactggtacagggtgtcaaaaggtttggtcaaatgcttattctccaatggatatccacccatttgagccgaaaagacagcttccgagaactggtcaaaacccctgtaattccaccaccaatggaggatgcagccgtctgtgtttgttgaatgctcgtggtcactcgtgtgcatgcccaactggtgtgaagcttttgtctgatggaaaaacgtgtgagcaaggtcctgtgcaattcttattgcttgcaaggatggaggatctgggccgcatatcgctcgacacacctaatcttactgatgtagttgtgccagtttctggtatcaaacatgctgttgccattgattttgatccagttgataaatttgtgtattggagcgatgacgtgaaacgtgaaataaagagatgccgaatgaatggatccgatgacgaggtcatagtttcaagtgaagttaaacatcccgatggtatcgcagttgactgggtggcgcggaacttatactggacagatacaggcactgatagaattgaagtcagcaggctgaatggctcgtcaagaaaagttcttattagtgaaaatctcgatgaacctagagcgattgtattggatccaactcgtgggtacatgtactggactgactggggaatccatccaaagattgaacgagcaggacttgatggaagtcaccgcattgccttggtcaacacatctgttgtgtggccaaacagtctcaccattgattaccttgatcgcacaatctactgggctgacgccaacttggacaagatagaggtcatgaacttggatgggagtaatcgcagagtagttctggatcgaaaactgccacacatcgttagtgttactgttcttggtgatcggttatattgggctgactggcataaaagggctatagagagtgtggacaagaaaacccgcaatgacagacaaatcatcattgacggtctgcctgatttgatgggattaaaagctttcaatcttagccttacttatggttctaatccctgccagcataacaatggaggttgtagtcatctgtgtttatacaggccttcaggagttaaatgcgaatgcccaacagggatggagctgcttgctgacaagaaaagttgtttccttgacagaaaagatccaataaagtgcagatgtgaccgttgtgtgaaaacaaactacacttgcaacaccatcaaaggagcatgtattgtgtacattcatcgcgaagagaatggtgatattaaacaaaccaggagttgtacccctgagcacattgtagccatacttttatgtcgaggctatgatggagacccaaaccaagatgcatactgctgtaacaaggatatgtgcaatactgttgataagattaatcttactttaccaactgtgagtcctttcacctctcatcgtactagtaaaggttcttcccttactacgggtaaaaagccaggacttaatcaaaccattatttatgtgtctgcatcgattggaatcctgctccacgaattcaagtaccatgttttcataatatacaaccaagaggattcccattgggtgagccgcacactccttccgttacttgaagagaagcatcatttaaagttctgcattcagtacagggactttacacctggaaagcctttctcagagagcatggcggaaagtgtctacaacagctacaaaatcatagcagtgttattaaacaattttttgaagagtaactactgtagctacgaactcaacatcgcaaaataccgacttctaaacaggcgagacaacagtctggttattataaggatcgataaagaatcggattgctgcaagcttgcacgagagctaagaaaaaggaatttcatcgattattctaactcactggaaaggccactgtgggaaagcctagattatgcttag

Transcript

evm.model.Ap12.2210

ATGGAAGTTTTGCCTCAGCTTCTTATCACTCTGCTAGCTCTGTGCATTACTCCATCGGCCTACTCTCAGAGGTTGTTATACGCCAATCGAAAAGATATAAGAATCTTTGGGACGAGCGGCCAGGACCAGAATGAAACTATAGTAGTGGATGGCCTTAAAGATGCCATTTCTGTGGATTTCTCCTTTGCGGAAGGATTTGTGTTTTGGACCGATGCTAGCTTGAAGAAAATCAAGCGAATTCGTGTCACAGTAGAAACAAAAAAAGTCGAGGATGTGATCTCTGTGGGTTTGAGGAAACCTGAGGGATTGGCTGTAGACTGGATAGCGAAAAAGTTGTATTGGACTGACAGTCAAGGTTTTGACTGGGAAACGAGTAAAATTGAAGTTGCAAATTTTGATGGATCTTATCGAAAAGTTCTTTTCTGGAAAGACGTGGGACTTCCAAGGGCTATTGCCGTGGATCCAATCAAAGGTGTCGTGTTCTGGACGGACTGGGGTGATAAACCCAAAGTAGAGAGAGCTGAAATGGATGGCTCCAATCGTCAAGCTATCATCCGACAGGACATCCAATGGCCCAATGGGCTGACAATAGACTACAGTACAGAGAAAATATACTGGATTGATGCAAAATTGTATTACATAGCTAAAGCTAATTATGACGGTTCAAACCGTCATAAGATATTCAAAACTCCTATGCCCAGTCAATGTGTATTGGGTCATCCATTTGCTATGACATTATATGAGAACAAAATTTACTGGACTGATTCGAAAACCAAAGGCATTTACTCTATGGACAAGAATACTGGTACAGGGTGTCAAAAGGTTTGGTCAAATGCTTATTCTCCAATGGATATCCACCCATTTGAGCCGAAAAGACAGCTTCCGAGAACTGGTCAAAACCCCTGTAATTCCACCACCAATGGAGGATGCAGCCGTCTGTGTTTGTTGAATGCTCGTGGTCACTCGTGTGCATGCCCAACTGGTGTGAAGCTTTTGTCTGATGGAAAAACGTGTGAGCAAGGTCCTGTGCAATTCTTATTGCTTGCAAGGATGGAGGATCTGGGCCGCATATCGCTCGACACACCTAATCTTACTGATGTAGTTGTGCCAGTTTCTGGTATCAAACATGCTGTTGCCATTGATTTTGATCCAGTTGATAAATTTGTGTATTGGAGCGATGACGTGAAACGTGAAATAAAGAGATGCCGAATGAATGGATCCGATGACGAGGTCATAGTTTCAAGTGAAGTTAAACATCCCGATGGTATCGCAGTTGACTGGGTGGCGCGGAACTTATACTGGACAGATACAGGCACTGATAGAATTGAAGTCAGCAGGCTGAATGGCTCGTCAAGAAAAGTTCTTATTAGTGAAAATCTCGATGAACCTAGAGCGATTGTATTGGATCCAACTCGTGGGTACATGTACTGGACTGACTGGGGAATCCATCCAAAGATTGAACGAGCAGGACTTGATGGAAGTCACCGCATTGCCTTGGTCAACACATCTGTTGTGTGGCCAAACAGTCTCACCATTGATTACCTTGATCGCACAATCTACTGGGCTGACGCCAACTTGGACAAGATAGAGGTCATGAACTTGGATGGGAGTAATCGCAGAGTAGTTCTGGATCGAAAACTGCCACACATCGTTAGTGTTACTGTTCTTGGTGATCGGTTATATTGGGCTGACTGGCATAAAAGGGCTATAGAGAGTGTGGACAAGAAAACCCGCAATGACAGACAAATCATCATTGACGGTCTGCCTGATTTGATGGGATTAAAAGCTTTCAATCTTAGCCTTACTTATGGTTCTAATCCCTGCCAGCATAACAATGGAGGTTGTAGTCATCTGTGTTTATACAGGCCTTCAGGAGTTAAATGCGAATGCCCAACAGGGATGGAGCTGCTTGCTGACAAGAAAAGTTGTTTCCTTGACAGAAAAGATCCAATAAAGTGCAGATGTGACCGTTGTGTGAAAACAAACTACACTTGCAACACCATCAAAGGAGCATGTATTGTGTACATTCATCGCGAAGAGAATGGTGATATTAAACAAACCAGGAGTTGTACCCCTGAGCACATTGTAGCCATACTTTTATGTCGAGGCTATGATGGAGACCCAAACCAAGATGCATACTGCTGTAACAAGGATATGTGCAATACTGTTGATAAGATTAATCTTACTTTACCAACTGTGAGTCCTTTCACCTCTCATCGTACTAGTAAAGGTTCTTCCCTTACTACGGGTAAAAAGCCAGGACTTAATCAAACCATTATTTATGTGTCTGCATCGATTGGAATCCTGCTCCACGAATTCAAGTACCATGTTTTCATAATATACAACCAAGAGGATTCCCATTGGGTGAGCCGCACACTCCTTCCGTTACTTGAAGAGAAGCATCATTTAAAGTTCTGCATTCAGTACAGGGACTTTACACCTGGAAAGCCTTTCTCAGAGAGCATGGCGGAAAGTGTCTACAACAGCTACAAAATCATAGCAGTGTTATTAAACAATTTTTTGAAGAGTAACTACTGTAGCTACGAACTCAACATCGCAAAATACCGACTTCTAAACAGGCGAGACAACAGTCTGGTTATTATAAGGATCGATAAAGAATCGGATTGCTGCAAGCTTGCACGAGAGCTAAGAAAAAGGAATTTCATCGATTATTCTAACTCACTGGAAAGGCCACTGTGGGAAAGCCTAGATTATGCTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75581	Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens OX=9606 GN=LRP6 PE=1 SV=2
O88572	Low-density lipoprotein receptor-related protein 6 OS=Mus musculus OX=10090 GN=Lrp6 PE=1 SV=1
Q91VN0	Low-density lipoprotein receptor-related protein 5 OS=Mus musculus OX=10090 GN=Lrp5 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001295 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14670 all species →	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan
PF00058 all species →	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF13676 all species →	TIR_2	TIR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000033 all species →	Repeat	LDLR class B repeat	Interproscan
IPR000157 all species →	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR050778 all species →	Family	Cueball/EGF/LRP/Nidogen	Interproscan
IPR035897 all species →	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR045860 all species →	Homologous_superfamily	Snake toxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513 all species →	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03068	LRP5_6; low density lipoprotein receptor-related protein 5/6	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.