Gene detail

Detailed information of evm.model.Ap12.2235.1.5f15e669 in Astrangia poculata

Genomic Location: Ap12:23790991...23817971
NR annotation: CAH3015182.1, unnamed protein product [Porites evermanni]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.2235.1.5f15e669

atgactcacaactatgtagtgacggcacacaagcctacagccgtcaatgcagcggtggttggcaattttacagctgcagatgatctgaatttgatcattgctaagaacacacggctggaaatccatgttgtgactccagagggcttgcgacctcatctcgacattggaatatatggacgaatttctgttatggaacttttcagacctgcgaatgagccccaggaccttttatttattctaacagcaagatacagagtatttattcttagttacaaaccagagactggcgatgttgttaccagagcttgtggagatgtccaggatcgcattggcagaccatcggacacgggtttgattggtattatagatccacagtgccgtatgattggtcttcgactttatgatggactctttaaagtgattcctttagaactggactccaacaaagaactcaaagcatttaatatcaggcttgaagaactccatgtgattgacattgcattccttcatggctgtcaagtccctacaattgtttttatttatcaggatcctcatggccgccacgtcaaaacatatgagattatactccgagataaagagttcaacagaggtccttggaaacaagataatgtggaggtggaggcatcaagggttattgcagttccagaaccactaggtggggctctcattattggacaagaatctataacttaccacaaaggagctaattatcatgctattgctcctcctgctttgaagcaaagtaccatcacttgctatggtaagattgacgctaatggctcacggtatctcttgggtgatatgaatggccgactattcatgttacttcttgagaggcaagaactaatggatggtaccattgaagtcaaagatcttaagctggaacttctaggagagacttcaacagcacactgccttacatacttggataatggagtggtttttattggttcagcactgggagactcgcagctagttaagctcaacacagagacaaatgaggatggctcacatgttcatgtcatggaaacctttacaaaccttggtcctattgtggacatggtggtggttgacttggaaagacaaggccaggggcagcttgtgacttgttctggtgcactcaaggaaggttcgttaagaattataagaaatggaattggtatccatgaacatgctaccatatcagacctggttggcatcatgggtatctggcctctaagattacgaaaaacagcaaagaattttgatgatgcattgcttctctcctttgttggacagagcagaattttagctctcactggtgaagaagttgaagagacagaaattcctggttttgatgataatcaacagacatacttttgtggaaatgtaactggcgatcaagtcattcaggttaccacgtcatctgtgcgtcttgtgagttgtgagacaagacaacttgttggtgaatggcgacaccctactggtaagaacatcagtgtctgtgcatgcaactctgaacaacttgtggtggctgtgggctgtgaactgtactacctggagatacttgttggcaaaataaaccttatcagccaaacaactctggaacatgaagtggcttgtctggatatcacaccaacatatgagtctgacaccagagctgacttagtagctgtaggtttatggactgatatctcagtcagagtgctgaaattaccaagctgtgaacagctgtttgttgaaatgctcggcggagaaataatacctcgttccatacttaagacatcatttgaaggcattcactatctgctgtgtgcactgggagatggaactttgttttatttcactatggatccaaacacaggatccctctcagagaggaagaaagtgacccttggtacacagcctaccatgctgagaacgttcaagtcactgtccacaacaaatgtgtttgcatgttctgatcggcctacagtgatctactccagtaatcataaactggtgttctctaatgttaatctcaaggaagttaattacatgtgccccctgaactctgaaggatttccggacagtcttgctgtagccagtgaaggagcattgacaataggaaccattgatgaaatccaaaagcttcacattcgaactgttcccctgggagaaacaccaaggcgtattgcataccaagagtccacgcaaacgtttggtgtgatatcgatgcgtatcgaggtcctggatccagcgacaaacaccacccgacccctccaccccagcgccagtacaatggctcagaacataacgtccagtgtcacggctgccatgccggggacttccgccggaagtgcgggaggaagcagaggtgctgctgacggcattacgtttggtgatgaggtggagagaagcagtttgttgatcattgatcagcacacctttgaagttacccacgcccatgaccttcaagatcacgagtgtgctacaagcctgatatcgtgcacattaggtgatcctaacagctcttttggcaatggaacatccaacacctactactgcgtcggaactgcgtacgtcttccctgaagaagctgaacccaaaacaggacggctgatcctttttcagttgctggatggaaaacttgttcaagtcgctgaaaaagaagtcaaaggtgccgtgtattcacttgtggagttcaatggaaaggttctggctggcatcaacagcactgtcagtatatatgagtggactcaggataaggagttacgagtggagtgcagctttttaaataacattctggccttatatctcaagtctaaaggggatttcatattggttggcgatttgatgaggtccatgactctgcttgcctataaatcgatggaaggaagtttagaagagattgcacatgattacagtccaaactggatgacagccgtggagattttggatgatgacactttccttggagctgaaaattcgttcaaccttttcacgtgtcaaaaggacagcggctcggcggctgatgatgacaggtcgtaccttcaagaggctggacagtttcacctgggagaatttgttaacgtctttagacatggatctctagtcatggaacaccctggtgaagcttccacaccattccagggttgcatccttttcggtaccgtcaatggaacaataggaattgtcgcccagttacccaaagaactcagtaccttcttgacgcaagtccaagggaaacttagtaaagttatcaagagcgttggaaagattgatcatggattctggcgttgcttttccaatgaaaggagaacggagccagctatcggctttgtggacggagatctgatcgaaagcttcctagacctccctcggtcaaagatggaggaggtgacctcgggactacaaattgacgatggtagcggaatgaagaaagagtgcactgtagaagatctggtgaaagttgttgaagaacttacaagaatccattaa

Transcript

evm.model.Ap12.2235.1.5f15e669

ATGACTCACAACTATGTAGTGACGGCACACAAGCCTACAGCCGTCAATGCAGCGGTGGTTGGCAATTTTACAGCTGCAGATGATCTGAATTTGATCATTGCTAAGAACACACGGCTGGAAATCCATGTTGTGACTCCAGAGGGCTTGCGACCTCATCTCGACATTGGAATATATGGACGAATTTCTGTTATGGAACTTTTCAGACCTGCGAATGAGCCCCAGGACCTTTTATTTATTCTAACAGCAAGATACAGAGTATTTATTCTTAGTTACAAACCAGAGACTGGCGATGTTGTTACCAGAGCTTGTGGAGATGTCCAGGATCGCATTGGCAGACCATCGGACACGGGTTTGATTGGTATTATAGATCCACAGTGCCGTATGATTGGTCTTCGACTTTATGATGGACTCTTTAAAGTGATTCCTTTAGAACTGGACTCCAACAAAGAACTCAAAGCATTTAATATCAGGCTTGAAGAACTCCATGTGATTGACATTGCATTCCTTCATGGCTGTCAAGTCCCTACAATTGTTTTTATTTATCAGGATCCTCATGGCCGCCACGTCAAAACATATGAGATTATACTCCGAGATAAAGAGTTCAACAGAGGTCCTTGGAAACAAGATAATGTGGAGGTGGAGGCATCAAGGGTTATTGCAGTTCCAGAACCACTAGGTGGGGCTCTCATTATTGGACAAGAATCTATAACTTACCACAAAGGAGCTAATTATCATGCTATTGCTCCTCCTGCTTTGAAGCAAAGTACCATCACTTGCTATGGTAAGATTGACGCTAATGGCTCACGGTATCTCTTGGGTGATATGAATGGCCGACTATTCATGTTACTTCTTGAGAGGCAAGAACTAATGGATGGTACCATTGAAGTCAAAGATCTTAAGCTGGAACTTCTAGGAGAGACTTCAACAGCACACTGCCTTACATACTTGGATAATGGAGTGGTTTTTATTGGTTCAGCACTGGGAGACTCGCAGCTAGTTAAGCTCAACACAGAGACAAATGAGGATGGCTCACATGTTCATGTCATGGAAACCTTTACAAACCTTGGTCCTATTGTGGACATGGTGGTGGTTGACTTGGAAAGACAAGGCCAGGGGCAGCTTGTGACTTGTTCTGGTGCACTCAAGGAAGGTTCGTTAAGAATTATAAGAAATGGAATTGGTATCCATGAACATGCTACCATATCAGACCTGGTTGGCATCATGGGTATCTGGCCTCTAAGATTACGAAAAACAGCAAAGAATTTTGATGATGCATTGCTTCTCTCCTTTGTTGGACAGAGCAGAATTTTAGCTCTCACTGGTGAAGAAGTTGAAGAGACAGAAATTCCTGGTTTTGATGATAATCAACAGACATACTTTTGTGGAAATGTAACTGGCGATCAAGTCATTCAGGTTACCACGTCATCTGTGCGTCTTGTGAGTTGTGAGACAAGACAACTTGTTGGTGAATGGCGACACCCTACTGGTAAGAACATCAGTGTCTGTGCATGCAACTCTGAACAACTTGTGGTGGCTGTGGGCTGTGAACTGTACTACCTGGAGATACTTGTTGGCAAAATAAACCTTATCAGCCAAACAACTCTGGAACATGAAGTGGCTTGTCTGGATATCACACCAACATATGAGTCTGACACCAGAGCTGACTTAGTAGCTGTAGGTTTATGGACTGATATCTCAGTCAGAGTGCTGAAATTACCAAGCTGTGAACAGCTGTTTGTTGAAATGCTCGGCGGAGAAATAATACCTCGTTCCATACTTAAGACATCATTTGAAGGCATTCACTATCTGCTGTGTGCACTGGGAGATGGAACTTTGTTTTATTTCACTATGGATCCAAACACAGGATCCCTCTCAGAGAGGAAGAAAGTGACCCTTGGTACACAGCCTACCATGCTGAGAACGTTCAAGTCACTGTCCACAACAAATGTGTTTGCATGTTCTGATCGGCCTACAGTGATCTACTCCAGTAATCATAAACTGGTGTTCTCTAATGTTAATCTCAAGGAAGTTAATTACATGTGCCCCCTGAACTCTGAAGGATTTCCGGACAGTCTTGCTGTAGCCAGTGAAGGAGCATTGACAATAGGAACCATTGATGAAATCCAAAAGCTTCACATTCGAACTGTTCCCCTGGGAGAAACACCAAGGCGTATTGCATACCAAGAGTCCACGCAAACGTTTGGTGTGATATCGATGCGTATCGAGGTCCTGGATCCAGCGACAAACACCACCCGACCCCTCCACCCCAGCGCCAGTACAATGGCTCAGAACATAACGTCCAGTGTCACGGCTGCCATGCCGGGGACTTCCGCCGGAAGTGCGGGAGGAAGCAGAGGTGCTGCTGACGGCATTACGTTTGGTGATGAGGTGGAGAGAAGCAGTTTGTTGATCATTGATCAGCACACCTTTGAAGTTACCCACGCCCATGACCTTCAAGATCACGAGTGTGCTACAAGCCTGATATCGTGCACATTAGGTGATCCTAACAGCTCTTTTGGCAATGGAACATCCAACACCTACTACTGCGTCGGAACTGCGTACGTCTTCCCTGAAGAAGCTGAACCCAAAACAGGACGGCTGATCCTTTTTCAGTTGCTGGATGGAAAACTTGTTCAAGTCGCTGAAAAAGAAGTCAAAGGTGCCGTGTATTCACTTGTGGAGTTCAATGGAAAGGTTCTGGCTGGCATCAACAGCACTGTCAGTATATATGAGTGGACTCAGGATAAGGAGTTACGAGTGGAGTGCAGCTTTTTAAATAACATTCTGGCCTTATATCTCAAGTCTAAAGGGGATTTCATATTGGTTGGCGATTTGATGAGGTCCATGACTCTGCTTGCCTATAAATCGATGGAAGGAAGTTTAGAAGAGATTGCACATGATTACAGTCCAAACTGGATGACAGCCGTGGAGATTTTGGATGATGACACTTTCCTTGGAGCTGAAAATTCGTTCAACCTTTTCACGTGTCAAAAGGACAGCGGCTCGGCGGCTGATGATGACAGGTCGTACCTTCAAGAGGCTGGACAGTTTCACCTGGGAGAATTTGTTAACGTCTTTAGACATGGATCTCTAGTCATGGAACACCCTGGTGAAGCTTCCACACCATTCCAGGGTTGCATCCTTTTCGGTACCGTCAATGGAACAATAGGAATTGTCGCCCAGTTACCCAAAGAACTCAGTACCTTCTTGACGCAAGTCCAAGGGAAACTTAGTAAAGTTATCAAGAGCGTTGGAAAGATTGATCATGGATTCTGGCGTTGCTTTTCCAATGAAAGGAGAACGGAGCCAGCTATCGGCTTTGTGGACGGAGATCTGATCGAAAGCTTCCTAGACCTCCCTCGGTCAAAGATGGAGGAGGTGACCTCGGGACTACAAATTGACGATGGTAGCGGAATGAAGAAAGAGTGCACTGTAGAAGATCTGGTGAAAGTTGTTGAAGAACTTACAAGAATCCATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3U1J4	DNA damage-binding protein 1 OS=Mus musculus OX=10090 GN=Ddb1 PE=1 SV=2
A1A4K3	DNA damage-binding protein 1 OS=Bos taurus OX=9913 GN=DDB1 PE=1 SV=1
Q16531	DNA damage-binding protein 1 OS=Homo sapiens OX=9606 GN=DDB1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003786 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DDB1 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10433 all species →	MMS1_N	Mono-functional DNA-alkylating methyl methanesulfonate N-term	Repeat	Interproscan
PF03178 all species →	CPSF_A	CPSF A subunit region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR018846 all species →	Domain	Cleavage/polyadenylation specificity factor, A subunit, N-terminal	Interproscan
IPR004871 all species →	Domain	Cleavage/polyadenylation specificity factor, A subunit, C-terminal	Interproscan
IPR050358 all species →	Family	RSE1/DDB1/CFT1/CPSF1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10644 all species →	DNA REPAIR/RNA PROCESSING CPSF FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0035861 all species →	Cellular Component	site of double-strand break	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10610	DDB1; DNA damage-binding protein 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.