Gene detail

Detailed information of evm.model.Ap12.224 in Astrangia poculata

Genomic Location: Ap12:2124698...2139874
NR annotation: KAJ7340419.1, hypothetical protein OS493_003165 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.224

atgattaacggcacatggcgacgctcacttctagatgttaaggtgagaagaggagcagatgttggcagtgaccatcaccttgtcacggcgtatgttaagctgaagctaagaagcactggtcgcaagccaccatgcaaccagcgcttcaacatagacaacttgaaagagcaatcagtgagaaatgctttcatcactcagctcagaaatcgattccaatccttggcagatctgtctgatgagcccgaacctgaacctgaacctgatgaggtcaacaatatatggaagcaagtgtcattcactttcacagagagcagcaatgcatgtttaggttttaagaaggctgtaaagaaaaagaagtggataaagccagcaaccttaagagccatcgaggacagacgaaaactgaagaagaaactatttgacaccaaatcagaaaggttgcaagagcgctataagacccagtacagagaggctgaccgatgtgttaagagaatggccagagctgataaacgcgcatatactgatgagcttgctagccaggcagaaaatgcagccaacagaggacagcagggaaaggtttacaaaatcacaaaactgcatgatgacgatgatgatgacgacgacgacgatgatggtgatgatgatggtgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgctgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgacgatcgtttcttccaatttctgctactggcaggtttcatattattttgtggaaaaggaaacgcttctgtagatggcgagtttaaatctccccagggagagctgttaccagaacacaaaggagcgagaactgcaaatgtctgcaaaggagaaccagacggtcactatatcgacgcacacaacccctatgggtatataacttgcctgggagttggcaagcatcttcttgtggcttactggggtcagaacagctcagggggtaagtttcctcaaaatcccgaaaaagatctcaaggatgtttgcgcagagaggaaatacgacattattgtgattggatttgtggttacattctttggcaaaaacaataaagatcaaatgcccgaggtgaatttttcccgccattgctgggaccctgcgtcacctgcgcacccaaacctttacaagtgtccgaaaattgaagaaggcatcaaagcttgtcagcaggcgggaaagaaagttctcatctcgcttgggggtgccacaggaaacaatgaccttcaggacgcgcaagccagcgtccttgccaaaaatctgtgggatttgtttcttggcggaaagggaaggccaaatatacgaccatttggaagtgcaattcttgacggcattgacctggatattgaagaccacaaatcaggcggctacgctcaacttgtcaaaacccttcgagagttggagaaaacaggaggcgccaaaaagtacctcatcacaggggctcctcagtgtccattccctgatgcgtccctgggtcccaaatcgggaactgcattgggtgaccagggcggcgagttcgatcatgtctatgtgcaattctacaataacttctgccacaccggagaccaagcgcagttttatccaaatatggacaagtggcttcaatttgcagcgaacgctggtcaagcaagagacttttcgatttcgatgatactgaagaacaggaaaaggtctatgggtgggggccctaagatattcgtggggatgccgtccgctacgggaggtgcaggagatcccaaattttacaggacacctgaggaagtggcaaagatttatgagaaactgaagaacaagccacagttcggtggattcatgatatgggatgctgcttgggatcaacaaaatgccatccaaggcaaagcatacagtgaccacattgcagacatcatgggcaggagtgagcccggcgaacccacgcctcctgtcacgaccccttctggaggacccacgcctcccgtcacgacaccttctgcaggatccacctctcctgtcacggaaccttctgcaggaaccggacctctcacgacaccgtctgcaggaaccggacctgtcacgacacctgtcggacctaccccagggggaactactcctacatcacccatcggtccccctactccaccaacccctggggaaggtggaggtggtgatgatttctgtaaaggaaaacaggacggcgattatgcagacccgagtaaccccgcagggtacattagctgttctggagggataacctacaggagaccgtgtacaccgggacttgtttggaatgcagagaaaaagatctgcgactggccaagtaacgtgaaaaaatatcaatcacacgacacgacttttcaacggcctgtgcaaccacaaggactgcgggcgcagaagggaaatagagtccaggtattgaaacgaacaaatgagcgagcaagtaaacggacgaaaggataa

Transcript

evm.model.Ap12.224

ATGATTAACGGCACATGGCGACGCTCACTTCTAGATGTTAAGGTGAGAAGAGGAGCAGATGTTGGCAGTGACCATCACCTTGTCACGGCGTATGTTAAGCTGAAGCTAAGAAGCACTGGTCGCAAGCCACCATGCAACCAGCGCTTCAACATAGACAACTTGAAAGAGCAATCAGTGAGAAATGCTTTCATCACTCAGCTCAGAAATCGATTCCAATCCTTGGCAGATCTGTCTGATGAGCCCGAACCTGAACCTGAACCTGATGAGGTCAACAATATATGGAAGCAAGTGTCATTCACTTTCACAGAGAGCAGCAATGCATGTTTAGGTTTTAAGAAGGCTGTAAAGAAAAAGAAGTGGATAAAGCCAGCAACCTTAAGAGCCATCGAGGACAGACGAAAACTGAAGAAGAAACTATTTGACACCAAATCAGAAAGGTTGCAAGAGCGCTATAAGACCCAGTACAGAGAGGCTGACCGATGTGTTAAGAGAATGGCCAGAGCTGATAAACGCGCATATACTGATGAGCTTGCTAGCCAGGCAGAAAATGCAGCCAACAGAGGACAGCAGGGAAAGGTTTACAAAATCACAAAACTGCATGATGACGATGATGATGACGACGACGACGATGATGGTGATGATGATGGTGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGCTGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGACGATCGTTTCTTCCAATTTCTGCTACTGGCAGGTTTCATATTATTTTGTGGAAAAGGAAACGCTTCTGTAGATGGCGAGTTTAAATCTCCCCAGGGAGAGCTGTTACCAGAACACAAAGGAGCGAGAACTGCAAATGTCTGCAAAGGAGAACCAGACGGTCACTATATCGACGCACACAACCCCTATGGGTATATAACTTGCCTGGGAGTTGGCAAGCATCTTCTTGTGGCTTACTGGGGTCAGAACAGCTCAGGGGGTAAGTTTCCTCAAAATCCCGAAAAAGATCTCAAGGATGTTTGCGCAGAGAGGAAATACGACATTATTGTGATTGGATTTGTGGTTACATTCTTTGGCAAAAACAATAAAGATCAAATGCCCGAGGTGAATTTTTCCCGCCATTGCTGGGACCCTGCGTCACCTGCGCACCCAAACCTTTACAAGTGTCCGAAAATTGAAGAAGGCATCAAAGCTTGTCAGCAGGCGGGAAAGAAAGTTCTCATCTCGCTTGGGGGTGCCACAGGAAACAATGACCTTCAGGACGCGCAAGCCAGCGTCCTTGCCAAAAATCTGTGGGATTTGTTTCTTGGCGGAAAGGGAAGGCCAAATATACGACCATTTGGAAGTGCAATTCTTGACGGCATTGACCTGGATATTGAAGACCACAAATCAGGCGGCTACGCTCAACTTGTCAAAACCCTTCGAGAGTTGGAGAAAACAGGAGGCGCCAAAAAGTACCTCATCACAGGGGCTCCTCAGTGTCCATTCCCTGATGCGTCCCTGGGTCCCAAATCGGGAACTGCATTGGGTGACCAGGGCGGCGAGTTCGATCATGTCTATGTGCAATTCTACAATAACTTCTGCCACACCGGAGACCAAGCGCAGTTTTATCCAAATATGGACAAGTGGCTTCAATTTGCAGCGAACGCTGGTCAAGCAAGAGACTTTTCGATTTCGATGATACTGAAGAACAGGAAAAGGTCTATGGGTGGGGGCCCTAAGATATTCGTGGGGATGCCGTCCGCTACGGGAGGTGCAGGAGATCCCAAATTTTACAGGACACCTGAGGAAGTGGCAAAGATTTATGAGAAACTGAAGAACAAGCCACAGTTCGGTGGATTCATGATATGGGATGCTGCTTGGGATCAACAAAATGCCATCCAAGGCAAAGCATACAGTGACCACATTGCAGACATCATGGGCAGGAGTGAGCCCGGCGAACCCACGCCTCCTGTCACGACCCCTTCTGGAGGACCCACGCCTCCCGTCACGACACCTTCTGCAGGATCCACCTCTCCTGTCACGGAACCTTCTGCAGGAACCGGACCTCTCACGACACCGTCTGCAGGAACCGGACCTGTCACGACACCTGTCGGACCTACCCCAGGGGGAACTACTCCTACATCACCCATCGGTCCCCCTACTCCACCAACCCCTGGGGAAGGTGGAGGTGGTGATGATTTCTGTAAAGGAAAACAGGACGGCGATTATGCAGACCCGAGTAACCCCGCAGGGTACATTAGCTGTTCTGGAGGGATAACCTACAGGAGACCGTGTACACCGGGACTTGTTTGGAATGCAGAGAAAAAGATCTGCGACTGGCCAAGTAACGTGAAAAAATATCAATCACACGACACGACTTTTCAACGGCCTGTGCAACCACAAGGACTGCGGGCGCAGAAGGGAAATAGAGTCCAGGTATTGAAACGAACAAATGAGCGAGCAAGTAAACGGACGAAAGGATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P40954	Chitinase 3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=CHT3 PE=1 SV=2
P29029	Endochitinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CTS1 PE=1 SV=2
P29060	Acidic endochitinase OS=Nicotiana tabacum OX=4097 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001026 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01607 all species →	CBM_14	Chitin binding Peritrophin-A domain	Domain	Interproscan
PF00704 all species →	Glyco_hydro_18	Glycosyl hydrolases family 18	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001579 all species →	Active_site	Glycosyl hydrolases family 18 (GH18) active site	Interproscan
IPR002557 all species →	Domain	Chitin binding domain	Interproscan
IPR001223 all species →	Domain	Glycoside hydrolase family 18, catalytic domain	Interproscan
IPR050542 all species →	Family	Glycosyl Hydrolase 18 Family Chitinases	Interproscan
IPR036508 all species →	Homologous_superfamily	Chitin binding domain superfamily	Interproscan
IPR045321 all species →	Domain	Chitinase Cts1-like	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45708 all species →	ENDOCHITINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0008061 all species →	Molecular Function	chitin binding	Interproscan
GO:0004568 all species →	Molecular Function	chitinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap12.224.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.