Gene detail

Detailed information of evm.model.Ap12.2304 in Astrangia poculata

Genomic Location: Ap12:24505337...24533422
NR annotation: XP_020624379.1, importin-7-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.2304

atggatatacctcatctagccactatcttgtcgagtacttttgacccaaacttaagggaggaagcggagaaaaagctaaatgagattcacaagcttccaggattcctctcgctcttacttcaagtggtcatgtcgaatgaagtgcaaactccaatacggcagtctggtggaatttaccttaagaatatgattgctcagtactggaaggagagggaaccttcagaatcagttgatggggctgttccatttgttattgctgagcaagacaaagccacaatcagagagaatattgttgaggcagttattcatgctcctgaattaataagaattcagcttactgtatgcgtaagtcagatcctgcgacacgactttccagataagtggccaggagtgatcgacaaagtgaatggatttctggctgagaacagtcaggggacctggatgggtgcactgctcactttgtaccaggtggtcaagaaatatgaattcaaaaagccagaggaacgtcaagttcttcacaatattatgcaagttcttctgcctgtgctttatcagaggttcacatctataatggaagactcttcacaaatgtctgtagaaatacaaaaacaaatactaaagatattttttgctctaattcagtatgtccttcccatggaattaatcacatcagattcatttggaaagtggatgggagtctttcaatctgtggtggatagagaagtaccgcagtgtgcactggaaggtgatgaggaagagctagccaaactttcttggtggaaagcaaagaagtgggctttacacattctctgtcggttgtttgagagatatggtacacctggttcaataacaaaagaatatgaggagttttcagaatattactgcaaaagttttgctgtcagtgtgacacagattctccttaaagtattggatcagtacagacggaaagtgtttgtggctccacgcgtcctgcaacagacaataaactacttgaaaaatgggatttcaaattcacttcactggaaaataatgaggccccacatccaggcagtaatccaggaggttgtgtttccattgatgtgttacaccgaggaagatgacgaactctggcaagaggatccttacgagtttataagagttaaatatgatatctttgaagactttgtctcacctgtaactgctgcagcaactctccttcacactgccgtttcaaaacgaaaacaagtccttgatcctacaatggtgttttgtgtacatgttcttaacctgccagcagaacagcgggacccgcgacagaaggatggtgctcttcacatgattggaacattagctgatgtgttacttaagagaaaaatgtacaaggtgcagctagaaaatatgctagtgcaacacgtttatcccgagtttaaaaatccacaaggttatcttcgagccagggcatgctgggtcttgcacagttttggagatataaccttcaaagaagaaagaaacctagccaccgctgtggattctgcccgtatttgtttaactgaagatgatgatccccctgtcattgttgaggccgccattgctttgcagtttctcattgagaaacaggaaggatctaaaaagtatattgaaccacacgtgcgacagatcatcctgcaactgttgaaagtgattcgtgaaacagagaatgatgatttaacaggagtgatgcagaaactcatctccacatacggagatcaagaacaagtggcaagcattgccatagatatcgccagagatctggcaggcacctttgttcagctgttagatggtgatgatagtgacgagaaagctgtcactgccatgggaattctgaacacattagagacaatgttaaatgtcatggaaggatctaaagagattgtacatcagctggaacaggtcgttatctctttaatagcaaaagtcctggagctctctgtgatggagttttacgaagatatcttgtccatcatctgtacctgcacatgttttgagatctcaccatccatgtggacagtatattatatgctgtacgaggctttccagagagatgcgtttgattattttgcagaaatgatgccatgtcttcacaactacatcacagtggacacacccgccttcttagcaaatcctaagaacctagaaatcatatataacatgtgtaaaaagatgatgacagattcctcttcacaagaggatcaacagtgtaatgcggcaaagttgttagaagtgacaatacttcagtgtcgtggccatatggatcagtggcttcctttctatgtggaagcagcattggaaagattgacaagagaggttaaggagagtgaattacgaaccatgtgtttacaagtggcaatagcaggattaatatacaatactccacttctgttaagcatactggacaaactccagtttccaaacactaacgagacagtctcagcacagttcttcagtcactgggttaatgactttgattgcttcttcggtatccatgatcgtaaggtgtttgtgttgggattctgtgcactcatggatctaccaaaagagatgcggccacaggctctcctgcagtgctcgccccagattctcccggccttgatagttctattccaaggactcaaaagagcgtatgaaaacagaggtgacgatgacggtgacaatgaagatgatgatgagggagattcagatgaagatgagctggctagtgacgaggacgaaatcaacgaggatgatgttcagtatattgaaggtcttgctcaaaaggctgctgagcatttagatgatgatgacgatgttgaagatgaagaaacagctcttgaaaacttcaccacatctgtggacaatgaagaaaccgatgagtacatcgccttcaggacttcaatgcaagctcttgagactagtgaccctgattggtatacggcactgaccagtgtcttgacaaacgagcaggccaaatcattacaggaagtgtttcacctggccgagcagaggaaagcttcattagaatccaagcgaatcgagcaacaaggaggatacatgttcaccaacatgactgtaccgaataccttcaactttggacagtaa

Transcript

evm.model.Ap12.2304

ATGGATATACCTCATCTAGCCACTATCTTGTCGAGTACTTTTGACCCAAACTTAAGGGAGGAAGCGGAGAAAAAGCTAAATGAGATTCACAAGCTTCCAGGATTCCTCTCGCTCTTACTTCAAGTGGTCATGTCGAATGAAGTGCAAACTCCAATACGGCAGTCTGGTGGAATTTACCTTAAGAATATGATTGCTCAGTACTGGAAGGAGAGGGAACCTTCAGAATCAGTTGATGGGGCTGTTCCATTTGTTATTGCTGAGCAAGACAAAGCCACAATCAGAGAGAATATTGTTGAGGCAGTTATTCATGCTCCTGAATTAATAAGAATTCAGCTTACTGTATGCGTAAGTCAGATCCTGCGACACGACTTTCCAGATAAGTGGCCAGGAGTGATCGACAAAGTGAATGGATTTCTGGCTGAGAACAGTCAGGGGACCTGGATGGGTGCACTGCTCACTTTGTACCAGGTGGTCAAGAAATATGAATTCAAAAAGCCAGAGGAACGTCAAGTTCTTCACAATATTATGCAAGTTCTTCTGCCTGTGCTTTATCAGAGGTTCACATCTATAATGGAAGACTCTTCACAAATGTCTGTAGAAATACAAAAACAAATACTAAAGATATTTTTTGCTCTAATTCAGTATGTCCTTCCCATGGAATTAATCACATCAGATTCATTTGGAAAGTGGATGGGAGTCTTTCAATCTGTGGTGGATAGAGAAGTACCGCAGTGTGCACTGGAAGGTGATGAGGAAGAGCTAGCCAAACTTTCTTGGTGGAAAGCAAAGAAGTGGGCTTTACACATTCTCTGTCGGTTGTTTGAGAGATATGGTACACCTGGTTCAATAACAAAAGAATATGAGGAGTTTTCAGAATATTACTGCAAAAGTTTTGCTGTCAGTGTGACACAGATTCTCCTTAAAGTATTGGATCAGTACAGACGGAAAGTGTTTGTGGCTCCACGCGTCCTGCAACAGACAATAAACTACTTGAAAAATGGGATTTCAAATTCACTTCACTGGAAAATAATGAGGCCCCACATCCAGGCAGTAATCCAGGAGGTTGTGTTTCCATTGATGTGTTACACCGAGGAAGATGACGAACTCTGGCAAGAGGATCCTTACGAGTTTATAAGAGTTAAATATGATATCTTTGAAGACTTTGTCTCACCTGTAACTGCTGCAGCAACTCTCCTTCACACTGCCGTTTCAAAACGAAAACAAGTCCTTGATCCTACAATGGTGTTTTGTGTACATGTTCTTAACCTGCCAGCAGAACAGCGGGACCCGCGACAGAAGGATGGTGCTCTTCACATGATTGGAACATTAGCTGATGTGTTACTTAAGAGAAAAATGTACAAGGTGCAGCTAGAAAATATGCTAGTGCAACACGTTTATCCCGAGTTTAAAAATCCACAAGGTTATCTTCGAGCCAGGGCATGCTGGGTCTTGCACAGTTTTGGAGATATAACCTTCAAAGAAGAAAGAAACCTAGCCACCGCTGTGGATTCTGCCCGTATTTGTTTAACTGAAGATGATGATCCCCCTGTCATTGTTGAGGCCGCCATTGCTTTGCAGTTTCTCATTGAGAAACAGGAAGGATCTAAAAAGTATATTGAACCACACGTGCGACAGATCATCCTGCAACTGTTGAAAGTGATTCGTGAAACAGAGAATGATGATTTAACAGGAGTGATGCAGAAACTCATCTCCACATACGGAGATCAAGAACAAGTGGCAAGCATTGCCATAGATATCGCCAGAGATCTGGCAGGCACCTTTGTTCAGCTGTTAGATGGTGATGATAGTGACGAGAAAGCTGTCACTGCCATGGGAATTCTGAACACATTAGAGACAATGTTAAATGTCATGGAAGGATCTAAAGAGATTGTACATCAGCTGGAACAGGTCGTTATCTCTTTAATAGCAAAAGTCCTGGAGCTCTCTGTGATGGAGTTTTACGAAGATATCTTGTCCATCATCTGTACCTGCACATGTTTTGAGATCTCACCATCCATGTGGACAGTATATTATATGCTGTACGAGGCTTTCCAGAGAGATGCGTTTGATTATTTTGCAGAAATGATGCCATGTCTTCACAACTACATCACAGTGGACACACCCGCCTTCTTAGCAAATCCTAAGAACCTAGAAATCATATATAACATGTGTAAAAAGATGATGACAGATTCCTCTTCACAAGAGGATCAACAGTGTAATGCGGCAAAGTTGTTAGAAGTGACAATACTTCAGTGTCGTGGCCATATGGATCAGTGGCTTCCTTTCTATGTGGAAGCAGCATTGGAAAGATTGACAAGAGAGGTTAAGGAGAGTGAATTACGAACCATGTGTTTACAAGTGGCAATAGCAGGATTAATATACAATACTCCACTTCTGTTAAGCATACTGGACAAACTCCAGTTTCCAAACACTAACGAGACAGTCTCAGCACAGTTCTTCAGTCACTGGGTTAATGACTTTGATTGCTTCTTCGGTATCCATGATCGTAAGGTGTTTGTGTTGGGATTCTGTGCACTCATGGATCTACCAAAAGAGATGCGGCCACAGGCTCTCCTGCAGTGCTCGCCCCAGATTCTCCCGGCCTTGATAGTTCTATTCCAAGGACTCAAAAGAGCGTATGAAAACAGAGGTGACGATGACGGTGACAATGAAGATGATGATGAGGGAGATTCAGATGAAGATGAGCTGGCTAGTGACGAGGACGAAATCAACGAGGATGATGTTCAGTATATTGAAGGTCTTGCTCAAAAGGCTGCTGAGCATTTAGATGATGATGACGATGTTGAAGATGAAGAAACAGCTCTTGAAAACTTCACCACATCTGTGGACAATGAAGAAACCGATGAGTACATCGCCTTCAGGACTTCAATGCAAGCTCTTGAGACTAGTGACCCTGATTGGTATACGGCACTGACCAGTGTCTTGACAAACGAGCAGGCCAAATCATTACAGGAAGTGTTTCACCTGGCCGAGCAGAGGAAAGCTTCATTAGAATCCAAGCGAATCGAGCAACAAGGAGGATACATGTTCACCAACATGACTGTACCGAATACCTTCAACTTTGGACAGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9EPL8	Importin-7 OS=Mus musculus OX=10090 GN=Ipo7 PE=1 SV=2
O95373	Importin-7 OS=Homo sapiens OX=9606 GN=IPO7 PE=1 SV=1
O15397	Importin-8 OS=Homo sapiens OX=9606 GN=IPO8 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003286 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08506 all species →	Cse1	Cse1	Repeat	Interproscan
PF03810 all species →	IBN_N	Importin-beta N-terminal domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001494 all species →	Domain	Importin-beta, N-terminal domain	Interproscan
IPR013713 all species →	Domain	Exportin-2, central domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10997 all species →	IMPORTIN-7, 8, 11	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0005635 all species →	Cellular Component	nuclear envelope	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20223	IPO7, RANBP7; importin-7	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.