Detailed information of evm.model.Ap12.2344 in Astrangia poculata

Genomic Location: Ap12:24781499...24783837
NR annotation: XP_032745038.1, trefoil factor 1 [Rattus rattus]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P04155Trefoil factor 1 OS=Homo sapiens OX=9606 GN=TFF1 PE=1 SV=1
Q63467Trefoil factor 1 OS=Rattus norvegicus OX=10116 GN=Tff1 PE=3 SV=1
Q863T4Trefoil factor 1 OS=Canis lupus familiaris OX=9615 GN=TFF1 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001045 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00088
all species →		TrefoilTrefoil (P-type) domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR017994
all species →		FamilyP-type trefoil, chordataInterproscan
IPR000519
all species →		DomainP-type trefoil domainInterproscan
IPR044913
all species →		Homologous_superfamilyP-type trefoil domain superfamilyInterproscan
IPR017957
all species →		Conserved_siteP-type trefoil, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13826
all species →		INTESTINAL TREFOIL FACTOR-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005615
all species →		Cellular Componentextracellular spaceInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap12.2344.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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