Gene detail

Detailed information of evm.model.Ap12.2392 in Astrangia poculata

Genomic Location: Ap12:25291306...25300769
NR annotation: XP_020607008.1, sodium-coupled monocarboxylate transporter 1-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92911	Sodium/iodide cotransporter OS=Homo sapiens OX=9606 GN=SLC5A5 PE=1 SV=1
Q8BYF6	Sodium-coupled monocarboxylate transporter 1 OS=Mus musculus OX=10090 GN=Slc5a8 PE=1 SV=1
Q49B93	Sodium-coupled monocarboxylate transporter 2 OS=Mus musculus OX=10090 GN=Slc5a12 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000585 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00474 all species →	SSF	Sodium:solute symporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001734 all species →	Family	Sodium/solute symporter	Interproscan
IPR051163 all species →	Family	Sodium:Solute Symporter (SSF)	Interproscan
IPR038377 all species →	Homologous_superfamily	Sodium/glucose symporter superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42985 all species →	SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0006814 all species →	Biological Process	sodium ion transport	Interproscan
GO:0015293 all species →	Molecular Function	symporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14388	SLC5A8_12, SMCT; solute carrier family 5 (sodium-coupled monocarboxylate transporter), member 8/12	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.