Gene detail

Detailed information of evm.model.Ap12.2411 in Astrangia poculata

Genomic Location: Ap12:25491335...25507940
NR annotation: XP_020620564.1, cat eye syndrome critical region protein 2-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.2411

atgcgagtgactgtccaaattttcctttgtccattgtctccgggacagtcagtcaagttttcttctatctcgccccagacctctgtgggcgtggttctgagggaaaagcccggatgttcccggcttcatcttgtgtcgtcattgtacttagtcggccatctgttttgggtgacatggaaggatttagaagatgcacttgtcattgatggttctaatgaagagggaaacaaccgctttttggccgatcttcacgcgcgattgttgaggggattgtatgggataaaagatataacggccgagaattttgaaccatatctgtcacaagtgttgaaaatacgatgggaagatgaattagggagaaaaaacccgcttgcagacaaagaatacagtaaactttccacgagggaaaaagtggaaattcttcacaatctttgtgattttagacttgatgtagaagacgtgcctgaattgctcaagggcttagatgcagacagcttgcgtgtagagccattgggatttgacgccgagggcagaacattctggtacttctacggcaccagattataccgtgaagaaaagcctgggcagtcagacagcaaagcaaacaaaaagtccaaaaagaagaaaaaggtggaggcaaagaataagaaaaagaaaggaaaagtaaagaagaagaagaaagcaaaaggatcttcatctgactccgagggtgaatcagaatcaagtccaagcagtgaacttcccagcagtgattatgctgacgatgaagatgaaaatgacgatgagcaggaggtagattcagaggggaaggaagacacccaaaagaagccgaggccttcatggactgttgtctgttccacagaggaggaatggcaacagcttgctgagtcgtttaagaaaagcaaaaacaaagacgaaaagatgctttatgagacactcagtgttgactttgttccagagatcggcaagatgattgaggctaaggataaagccatgaggaaaaaactactaatggagatggcaccacggagggcatctgatagaatagcgtcaaaagtacaaggtaaggaggaggaggatgtgcaagaggagaatgaaagacagcgagaaagagaaagacaagcagaggagaaaaggaaggaagaggaggaaaaacaacgagagaaacaacaacaagcagagagaagacaacaagagagagccagaagagcacgtatgcgtgaagaaagacaatggctaatggctagcggtgaatttgatcctgatgaactgagagggggtttcaacaaggaagatgaaaacaaggacagtgataccgaaagacggcctgccagcacgcgaaataaaacatccggagagggagaggacatcggtctggaagatagagatgaggacctttacactggaatgtataaagttttggatgctttgaaaaagcataacaatgcatggcctttcctggagcctgtagaagaatcttatgcacctcagtactatgaaatcatagaagaaccaatggacttgtcaaccattgaacaaaagttggatgatagtaaatacaccagtttaaatgagttcagtgcagatatgaagttaatgtttgaaaactgtttagactacaatggctctgatagcatgtacacaaagatggcaaacagtcttgaggctgctttcaaccgacagttaaagaaacacttcccagaagatgatgacaatagcgatgaggactttgaagaagaacttgccaggaagaccaagaaggacaagaagaagcttggcagctctggctcgggaccagagatgtttagcagtgcccgtcactcagacgaacacccttttgcatctcaaatgggtccctctggaatgcagccaatgtttgcaaatcgcatgatgcctaatagcatggcaaatggtggtggcatgatgccctcgcatcacccctcacgaatgcccttccctggcccccctcacttcgcccctgatggcagaccactgtaccccccacagttctatcagaatgccttcaacccagctgcctttgcgagatttggcatgtcgcagccgggacctcagtataacagattcagatatccccaggggaatcccatggggcaaatgggtcagccgccccagccatcgcactaccctccccagcgcatgcctggaaggatgccattccagtacggaatgccaggagcaggtgggaatatgccaggaacaggtggaaatatgccaggagcaactggaaatatgccaggagcaggtgggaatatggagctgaatctcagggaaaacgacatgaacagccctaaccagacagaacaagccaagcaagtgtcgccacagcaaacagttcctgtctcaacgtcaggggaaccaactccttcctcagttacaggtgggactgaaagaggtcgtcattctcaacagcaaccacctcatggggccccaccctattacagaccacagtcctttaatcagccattcctaggctatcctcgaaatggcgccatgccgtacggagccccgggtgctgggccatatggacaacctatggtacctggcagagagccttggcgcttagatagacggactccagaggctgctccacagagaatgccatcagccgagggcccctttcgggaagaagccaagcccacgaaccctcctgaactatcaaaagcccaggcgccaaattttgttggaggccaacaactagctggaaactcaagcgacagcgagggagaagacagcgaagaagaacaaatagaaaaaattgaaaaaaatctgcaaaccaacggcagggaagaggcaagtgttgaaggaatgccacaagcaaaaagccgagttcctgctacgctttctatcagccatatcttaagcggtgcttcaagagatgatcaacaacatcatccagaaggcgccaaaacacgagaggcgcccgctcagggtgcacaacaagggccccctcctatgcaccccgcccacgcacgacaagttatccgatcaccagagaacagagaccggcttgctccgtcaaacgagcatttaaatagggtgcctggaaaaggaccctttgagaacgttccaggacgggcctcgtacgacaatgcgcacggacgaggaccctttggtattgctccgaacgatggcttcgaaagggcaggagtagggccccatggggaccctcgtcgacaggaatcgcacgaacatgcgtttggaatgaaatttaacgatagaaaacttttaggtgatgttgcggagagtgttattaagaaggcacctcaaaataacgcctctgaaccgggtctttataggaaaatgccagagcttagaccgataaaggaaagtgatcttgaagataaacagtcccgtgaaagaacattgaaaagtgtatctgaaaacgggcatttagagcccggtaaaacggagactgtttctcagagaatgcccactgaaggtatgaacaaacatctgaaggagactgagcgcttgacaccgtacaataagggctggcctgaggtacaaccaggcagctttcttcaagaacttaacgacgtggggccgccttctgcaagcaatataggcgacaaacctgagccggagaaaaatcatcggctaccttttacgtcgatgttgagaggactcagcccttcgcaaggtagtccagaaaaccgtggtcagttcttggcgatggacgcggcgaaccgtgaaaggatgcgtgaaaacatgatgcctgggaatttcctgcacagtcccgaagagaaacacgagcgcttcaaccctgcgcgtgccgctgatatgagcgcttacgccgccatgtacgcgaacaaacgcccgtctgaaatgatgccagccttgcagtacagaccgaacttatctgctatggcgcaccagcgaaacatggagtcagctcaactgcccccgggtgccaattcgcaatttgtggacctcaattctgtgcaatatcgttacccttcagggctgcccgctagggagtcgctcactagagaacagatgtactaccttgaacaacagcaacgcaggcagcagatggcgtcctctatggacgccatgatggcggggggacagccagatcgtatgatgagctacggcggtatgttacgtcagcagcaattgttcaatgctgcgtatgcaagtcatatgaggaacggcggcggcgagtttcctggatttccaaatgaagaaatccccgccaagatggcaagattcagttga

Transcript

evm.model.Ap12.2411

ATGCGAGTGACTGTCCAAATTTTCCTTTGTCCATTGTCTCCGGGACAGTCAGTCAAGTTTTCTTCTATCTCGCCCCAGACCTCTGTGGGCGTGGTTCTGAGGGAAAAGCCCGGATGTTCCCGGCTTCATCTTGTGTCGTCATTGTACTTAGTCGGCCATCTGTTTTGGGTGACATGGAAGGATTTAGAAGATGCACTTGTCATTGATGGTTCTAATGAAGAGGGAAACAACCGCTTTTTGGCCGATCTTCACGCGCGATTGTTGAGGGGATTGTATGGGATAAAAGATATAACGGCCGAGAATTTTGAACCATATCTGTCACAAGTGTTGAAAATACGATGGGAAGATGAATTAGGGAGAAAAAACCCGCTTGCAGACAAAGAATACAGTAAACTTTCCACGAGGGAAAAAGTGGAAATTCTTCACAATCTTTGTGATTTTAGACTTGATGTAGAAGACGTGCCTGAATTGCTCAAGGGCTTAGATGCAGACAGCTTGCGTGTAGAGCCATTGGGATTTGACGCCGAGGGCAGAACATTCTGGTACTTCTACGGCACCAGATTATACCGTGAAGAAAAGCCTGGGCAGTCAGACAGCAAAGCAAACAAAAAGTCCAAAAAGAAGAAAAAGGTGGAGGCAAAGAATAAGAAAAAGAAAGGAAAAGTAAAGAAGAAGAAGAAAGCAAAAGGATCTTCATCTGACTCCGAGGGTGAATCAGAATCAAGTCCAAGCAGTGAACTTCCCAGCAGTGATTATGCTGACGATGAAGATGAAAATGACGATGAGCAGGAGGTAGATTCAGAGGGGAAGGAAGACACCCAAAAGAAGCCGAGGCCTTCATGGACTGTTGTCTGTTCCACAGAGGAGGAATGGCAACAGCTTGCTGAGTCGTTTAAGAAAAGCAAAAACAAAGACGAAAAGATGCTTTATGAGACACTCAGTGTTGACTTTGTTCCAGAGATCGGCAAGATGATTGAGGCTAAGGATAAAGCCATGAGGAAAAAACTACTAATGGAGATGGCACCACGGAGGGCATCTGATAGAATAGCGTCAAAAGTACAAGGTAAGGAGGAGGAGGATGTGCAAGAGGAGAATGAAAGACAGCGAGAAAGAGAAAGACAAGCAGAGGAGAAAAGGAAGGAAGAGGAGGAAAAACAACGAGAGAAACAACAACAAGCAGAGAGAAGACAACAAGAGAGAGCCAGAAGAGCACGTATGCGTGAAGAAAGACAATGGCTAATGGCTAGCGGTGAATTTGATCCTGATGAACTGAGAGGGGGTTTCAACAAGGAAGATGAAAACAAGGACAGTGATACCGAAAGACGGCCTGCCAGCACGCGAAATAAAACATCCGGAGAGGGAGAGGACATCGGTCTGGAAGATAGAGATGAGGACCTTTACACTGGAATGTATAAAGTTTTGGATGCTTTGAAAAAGCATAACAATGCATGGCCTTTCCTGGAGCCTGTAGAAGAATCTTATGCACCTCAGTACTATGAAATCATAGAAGAACCAATGGACTTGTCAACCATTGAACAAAAGTTGGATGATAGTAAATACACCAGTTTAAATGAGTTCAGTGCAGATATGAAGTTAATGTTTGAAAACTGTTTAGACTACAATGGCTCTGATAGCATGTACACAAAGATGGCAAACAGTCTTGAGGCTGCTTTCAACCGACAGTTAAAGAAACACTTCCCAGAAGATGATGACAATAGCGATGAGGACTTTGAAGAAGAACTTGCCAGGAAGACCAAGAAGGACAAGAAGAAGCTTGGCAGCTCTGGCTCGGGACCAGAGATGTTTAGCAGTGCCCGTCACTCAGACGAACACCCTTTTGCATCTCAAATGGGTCCCTCTGGAATGCAGCCAATGTTTGCAAATCGCATGATGCCTAATAGCATGGCAAATGGTGGTGGCATGATGCCCTCGCATCACCCCTCACGAATGCCCTTCCCTGGCCCCCCTCACTTCGCCCCTGATGGCAGACCACTGTACCCCCCACAGTTCTATCAGAATGCCTTCAACCCAGCTGCCTTTGCGAGATTTGGCATGTCGCAGCCGGGACCTCAGTATAACAGATTCAGATATCCCCAGGGGAATCCCATGGGGCAAATGGGTCAGCCGCCCCAGCCATCGCACTACCCTCCCCAGCGCATGCCTGGAAGGATGCCATTCCAGTACGGAATGCCAGGAGCAGGTGGGAATATGCCAGGAACAGGTGGAAATATGCCAGGAGCAACTGGAAATATGCCAGGAGCAGGTGGGAATATGGAGCTGAATCTCAGGGAAAACGACATGAACAGCCCTAACCAGACAGAACAAGCCAAGCAAGTGTCGCCACAGCAAACAGTTCCTGTCTCAACGTCAGGGGAACCAACTCCTTCCTCAGTTACAGGTGGGACTGAAAGAGGTCGTCATTCTCAACAGCAACCACCTCATGGGGCCCCACCCTATTACAGACCACAGTCCTTTAATCAGCCATTCCTAGGCTATCCTCGAAATGGCGCCATGCCGTACGGAGCCCCGGGTGCTGGGCCATATGGACAACCTATGGTACCTGGCAGAGAGCCTTGGCGCTTAGATAGACGGACTCCAGAGGCTGCTCCACAGAGAATGCCATCAGCCGAGGGCCCCTTTCGGGAAGAAGCCAAGCCCACGAACCCTCCTGAACTATCAAAAGCCCAGGCGCCAAATTTTGTTGGAGGCCAACAACTAGCTGGAAACTCAAGCGACAGCGAGGGAGAAGACAGCGAAGAAGAACAAATAGAAAAAATTGAAAAAAATCTGCAAACCAACGGCAGGGAAGAGGCAAGTGTTGAAGGAATGCCACAAGCAAAAAGCCGAGTTCCTGCTACGCTTTCTATCAGCCATATCTTAAGCGGTGCTTCAAGAGATGATCAACAACATCATCCAGAAGGCGCCAAAACACGAGAGGCGCCCGCTCAGGGTGCACAACAAGGGCCCCCTCCTATGCACCCCGCCCACGCACGACAAGTTATCCGATCACCAGAGAACAGAGACCGGCTTGCTCCGTCAAACGAGCATTTAAATAGGGTGCCTGGAAAAGGACCCTTTGAGAACGTTCCAGGACGGGCCTCGTACGACAATGCGCACGGACGAGGACCCTTTGGTATTGCTCCGAACGATGGCTTCGAAAGGGCAGGAGTAGGGCCCCATGGGGACCCTCGTCGACAGGAATCGCACGAACATGCGTTTGGAATGAAATTTAACGATAGAAAACTTTTAGGTGATGTTGCGGAGAGTGTTATTAAGAAGGCACCTCAAAATAACGCCTCTGAACCGGGTCTTTATAGGAAAATGCCAGAGCTTAGACCGATAAAGGAAAGTGATCTTGAAGATAAACAGTCCCGTGAAAGAACATTGAAAAGTGTATCTGAAAACGGGCATTTAGAGCCCGGTAAAACGGAGACTGTTTCTCAGAGAATGCCCACTGAAGGTATGAACAAACATCTGAAGGAGACTGAGCGCTTGACACCGTACAATAAGGGCTGGCCTGAGGTACAACCAGGCAGCTTTCTTCAAGAACTTAACGACGTGGGGCCGCCTTCTGCAAGCAATATAGGCGACAAACCTGAGCCGGAGAAAAATCATCGGCTACCTTTTACGTCGATGTTGAGAGGACTCAGCCCTTCGCAAGGTAGTCCAGAAAACCGTGGTCAGTTCTTGGCGATGGACGCGGCGAACCGTGAAAGGATGCGTGAAAACATGATGCCTGGGAATTTCCTGCACAGTCCCGAAGAGAAACACGAGCGCTTCAACCCTGCGCGTGCCGCTGATATGAGCGCTTACGCCGCCATGTACGCGAACAAACGCCCGTCTGAAATGATGCCAGCCTTGCAGTACAGACCGAACTTATCTGCTATGGCGCACCAGCGAAACATGGAGTCAGCTCAACTGCCCCCGGGTGCCAATTCGCAATTTGTGGACCTCAATTCTGTGCAATATCGTTACCCTTCAGGGCTGCCCGCTAGGGAGTCGCTCACTAGAGAACAGATGTACTACCTTGAACAACAGCAACGCAGGCAGCAGATGGCGTCCTCTATGGACGCCATGATGGCGGGGGGACAGCCAGATCGTATGATGAGCTACGGCGGTATGTTACGTCAGCAGCAATTGTTCAATGCTGCGTATGCAAGTCATATGAGGAACGGCGGCGGCGAGTTTCCTGGATTTCCAAATGAAGAAATCCCCGCCAAGATGGCAAGATTCAGTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BXF3	Chromatin remodeling regulator CECR2 OS=Homo sapiens OX=9606 GN=CECR2 PE=1 SV=2
E9Q2Z1	Chromatin remodeling regulator CECR2 OS=Mus musculus OX=10090 GN=Cecr2 PE=1 SV=1
Q756G9	Histone acetyltransferase GCN5 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=GCN5 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004673 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15612 all species →	WHIM1	WSTF, HB1, Itc1p, MBD9 motif 1	Motif	Interproscan
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029614 all species →	Family	Chromatin remodeling regulator CECR2	Interproscan
IPR028942 all species →	Domain	WHIM1 domain	Interproscan
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR001487 all species →	Domain	Bromodomain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47092 all species →	CAT EYE SYNDROME CRITICAL REGION PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0090537 all species →	Cellular Component	CERF complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap12.2411.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.