Gene detail

Detailed information of evm.model.Ap12.242 in Astrangia poculata

Genomic Location: Ap12:2310363...2322352
NR annotation: KAJ7340410.1, radical S-adenosyl methionine domain-containing protein 1 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9HA92	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial OS=Homo sapiens OX=9606 GN=RSAD1 PE=1 SV=2
A5D7B1	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial OS=Bos taurus OX=9913 GN=RSAD1 PE=2 SV=1
A4IGH2	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial OS=Danio rerio OX=7955 GN=rsad1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004534 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06969 all species →	HemN_C	HemN C-terminal domain	Domain	Interproscan
PF04055 all species →	Radical_SAM	Radical SAM superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007197 all species →	Domain	Radical SAM	Interproscan
IPR006638 all species →	Domain	Elp3/MiaA/NifB-like, radical SAM core domain	Interproscan
IPR023404 all species →	Homologous_superfamily	Radical SAM, alpha/beta horseshoe	Interproscan
IPR004559 all species →	Family	Heme chaperone HemW-like	Interproscan
IPR010723 all species →	Domain	HemN, C-terminal	Interproscan
IPR034505 all species →	Family	Anaerobic coproporphyrinogen-III oxidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13932 all species →	COPROPORPHYRINIGEN III OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0004109 all species →	Molecular Function	coproporphyrinogen oxidase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006779 all species →	Biological Process	porphyrin-containing compound biosynthetic process	Interproscan
GO:0051539 all species →	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap12.242.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.