Detailed information of evm.model.Ap12.2444 in Astrangia poculata

Genomic Location: Ap12:25802293...25806720
NR annotation: XP_020620563.1, calcium-regulated heat-stable protein 1-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9Y2V2Calcium-regulated heat-stable protein 1 OS=Homo sapiens OX=9606 GN=CARHSP1 PE=1 SV=2
Q9WU49Calcium-regulated heat stable protein 1 OS=Rattus norvegicus OX=10116 GN=Carhsp1 PE=1 SV=1
Q9CR86Calcium-regulated heat stable protein 1 OS=Mus musculus OX=10090 GN=Carhsp1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008358 (this species only)
Transcription factor familyCSD · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00313
all species →		CSD'Cold-shock' DNA-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011129
all species →		DomainCold shock domainInterproscan
IPR019844
all species →		DomainCold-shock (CSD) domainInterproscan
IPR002059
all species →		DomainCold-shock protein, DNA-bindingInterproscan
IPR012340
all species →		Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR052069
all species →		FamilyCalcium-regulated mRNA-binding domain-containing proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12962
all species →		CALCIUM-REGULATED HEAT STABLE PROTEIN CRHSP-24-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0003730
all species →		Molecular FunctionmRNA 3'-UTR bindingInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0043488
all species →		Biological Processregulation of mRNA stabilityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap12.2444.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP