Genomic Location: Ap12:2349436...2353391
NR annotation: XP_020626508.1, uncharacterized protein LOC110063854 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap12.245 |
| Transcript |
| evm.model.Ap12.245 |
| Protein |
| evm.model.Ap12.245 |
| UniProt accession | Description |
|---|---|
| A7TS67 | Decapping nuclease RAI1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=RAI1 PE=3 SV=1 |
| Q6FWY5 | Decapping nuclease RAI1 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=RAI1 PE=3 SV=3 |
| C5DLH0 | Decapping nuclease RAI1 OS=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) OX=559295 GN=RAI1 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002769 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08652 all species → | RAI1 | RAI1 like PD-(D/E)XK nuclease | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013961 all species → | Domain | RAI1-like | Interproscan |
| IPR039039 all species → | Family | RAI1-like family | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12395 all species → | DOM-3 RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000956 all species → | Biological Process | nuclear-transcribed mRNA catabolic process | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0034353 all species → | Molecular Function | mRNA 5'-diphosphatase activity | Interproscan |
| GO:0090305 all species → | Biological Process | obsolete nucleic acid phosphodiester bond hydrolysis | Interproscan |
| GO:0110155 all species → | Biological Process | NAD-cap decapping | Interproscan |
evm.model.Ap12.245.Transcript abundance of evm.model.Ap12.245 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
