Gene detail

Detailed information of evm.model.Ap12.2453 in Astrangia poculata

Genomic Location: Ap12:25902309...25912086
NR annotation: XP_020620545.1, cyclin-F-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.2453

atgagacttcgaacgcggattccaccacgagcgcggtgttcactgctagctctacccgaagaagtcgtcctccttattttaaaacgtttgacggcaaatgaactaatgggcctgagaatggtgtgttcaagattaaagcagcttattgatgattcatccagtctatgggtatccgcgtcttttctaggagtttggccatcacacaaaaatctgcctcttcttcaaagggcagctaatttgggaaatccagaggcacttataaaacttggactcgctcatttgtataacgaaggaatttcagaaaatggagagaagggtgtcaatgcaaaagaaaatggtcgtcttgccgcagaattcttctttaaagctgaacgcactattcaaaatggtgcgccgttcacttggttttttgtacgccccccttgggcaccgtctggtgtgtgttgtaaatcatgtgtcttcaatagtatggtggaactttgttcagattctgaggtcaataagtcaatgttgtactgtgtgggaaaaatactaagtttacatgaggatgcaatgaaaaaggaagaaagtctgcagtggcttaaaaatgcagcagtccaaggatctcctcatgcagcctatgatctgtggaagttgcgattttgtgagggtccaatggaaccttactctcgactggagaggctcagggaattgcgagactgtgccacagctaatcaccccgatgctcaacttactcttgcacttgaatacaccaagggaaacctgggaggggtcactaaaacacaagtagcagagtttatctcacagtttgtgtcaagatcaaagccactcaatagtcacaagctctttagttttcaaacagaactcaacagcaccatgagatatatcttggttgactggctggtagaagttgctattatgaaggattttccaagccagatcgttcatattgctgtgaactgtgtagatcagtatttattgaggcgtaaagtgcagcggtcagaactgcagctactaggaatcacttgcatgttaatagcagcaaggtttcaaggaacagacattgtgacgataagagaggctgcttggttaactgacggaacatacaaatatgaagaagtagttagaatgatgggtgaagtgatgtcctgtatcaaaggccaagtcagagtccttaccataccagattttctgaagctattttgctgtcttgctgctgtcagtcaaaagactgattgtattgcaggatatgtagcggacttatccattttacacacagaatgcggaaggtattcaccagccttgatggcagcatccgctgttcttttagcaaactctattcaacaaatggagaccccatggccgctgcacatgcatgagataactggcttgggtcttgtggatcttgtggaatgcacacttcacttacaccaacaatgtctacttgaggaataccctgttgaccatagaaatgtgaaattaaaagctattaaagaaaggtactctgatgaacgctttatgaaagtcagccaaattacggttccgggccgcgacgagctatatcgctatctcctccccaaggtctctcagtctgagccgctaggtgacaagcgctcccttcgtggtcagtcagcagcaaggcatgcaagacatgcgcatcaccttactgctgatgacagcattttgaatgcgagtataggcagtttgtccgagagtggttatgaaggcgacatggaggatgaaggagatttgaacgttgatgaagaactctttagcgagctagccgacgatcaaaatggcgtgttgaataaacagtctaaagacttaaactcgtccttccttaactgggatgagttttcgaggactagttccacaccgagtattctccacccagctggtccacatagcgagtttgattttgaagttcaagacatggaaaccgactcggagcccgtgccgatggacaatgccattcatagtgcgggcgagctgcacgtgccggttgtcatggaagcagatgaaaatatggaactaggagagggctgtggcaagcccttggcttcaaacttgcgaagaagacaacctctaagacctattaacaacaataataataactttccagtaagagattccgtttcttggaaatctcagcgaaggacgtctgcttggagtagaacagttactcattga

Transcript

evm.model.Ap12.2453

TACAACAAATTTTCACTTTACCTCCGAAAAATGAGACTTCGAACGCGGATTCCACCACGAGCGCGGTGTTCACTGCTAGCTCTACCCGAAGAAGTCGTCCTCCTTATTTTAAAACGTTTGACGGCAAATGAACTAATGGGCCTGAGAATGGTGTGTTCAAGATTAAAGCAGCTTATTGATGATTCATCCAGTCTATGGGTATCCGCGTCTTTTCTAGGAGTTTGGCCATCACACAAAAATCTGCCTCTTCTTCAAAGGGCAGCTAATTTGGGAAATCCAGAGGCACTTATAAAACTTGGACTCGCTCATTTGTATAACGAAGGAATTTCAGAAAATGGAGAGAAGGGTGTCAATGCAAAAGAAAATGGTCGTCTTGCCGCAGAATTCTTCTTTAAAGCTGAACGCACTATTCAAAATGGTGCGCCGTTCACTTGGTTTTTTGTACGCCCCCCTTGGGCACCGTCTGGTGTGTGTTGTAAATCATGTGTCTTCAATAGTATGGTGGAACTTTGTTCAGATTCTGAGGTCAATAAGTCAATGTTGTACTGTGTGGGAAAAATACTAAGTTTACATGAGGATGCAATGAAAAAGGAAGAAAGTCTGCAGTGGCTTAAAAATGCAGCAGTCCAAGGATCTCCTCATGCAGCCTATGATCTGTGGAAGTTGCGATTTTGTGAGGGTCCAATGGAACCTTACTCTCGACTGGAGAGGCTCAGGGAATTGCGAGACTGTGCCACAGCTAATCACCCCGATGCTCAACTTACTCTTGCACTTGAATACACCAAGGGAAACCTGGGAGGGGTCACTAAAACACAAGTAGCAGAGTTTATCTCACAGTTTGTGTCAAGATCAAAGCCACTCAATAGTCACAAGCTCTTTAGTTTTCAAACAGAACTCAACAGCACCATGAGATATATCTTGGTTGACTGGCTGGTAGAAGTTGCTATTATGAAGGATTTTCCAAGCCAGATCGTTCATATTGCTGTGAACTGTGTAGATCAGTATTTATTGAGGCGTAAAGTGCAGCGGTCAGAACTGCAGCTACTAGGAATCACTTGCATGTTAATAGCAGCAAGGTTTCAAGGAACAGACATTGTGACGATAAGAGAGGCTGCTTGGTTAACTGACGGAACATACAAATATGAAGAAGTAGTTAGAATGATGGGTGAAGTGATGTCCTGTATCAAAGGCCAAGTCAGAGTCCTTACCATACCAGATTTTCTGAAGCTATTTTGCTGTCTTGCTGCTGTCAGTCAAAAGACTGATTGTATTGCAGGATATGTAGCGGACTTATCCATTTTACACACAGAATGCGGAAGGTATTCACCAGCCTTGATGGCAGCATCCGCTGTTCTTTTAGCAAACTCTATTCAACAAATGGAGACCCCATGGCCGCTGCACATGCATGAGATAACTGGCTTGGGTCTTGTGGATCTTGTGGAATGCACACTTCACTTACACCAACAATGTCTACTTGAGGAATACCCTGTTGACCATAGAAATGTGAAATTAAAAGCTATTAAAGAAAGGTACTCTGATGAACGCTTTATGAAAGTCAGCCAAATTACGGTTCCGGGCCGCGACGAGCTATATCGCTATCTCCTCCCCAAGGTCTCTCAGTCTGAGCCGCTAGGTGACAAGCGCTCCCTTCGTGGTCAGTCAGCAGCAAGGCATGCAAGACATGCGCATCACCTTACTGCTGATGACAGCATTTTGAATGCGAGTATAGGCAGTTTGTCCGAGAGTGGTTATGAAGGCGACATGGAGGATGAAGGAGATTTGAACGTTGATGAAGAACTCTTTAGCGAGCTAGCCGACGATCAAAATGGCGTGTTGAATAAACAGTCTAAAGACTTAAACTCGTCCTTCCTTAACTGGGATGAGTTTTCGAGGACTAGTTCCACACCGAGTATTCTCCACCCAGCTGGTCCACATAGCGAGTTTGATTTTGAAGTTCAAGACATGGAAACCGACTCGGAGCCCGTGCCGATGGACAATGCCATTCATAGTGCGGGCGAGCTGCACGTGCCGGTTGTCATGGAAGCAGATGAAAATATGGAACTAGGAGAGGGCTGTGGCAAGCCCTTGGCTTCAAACTTGCGAAGAAGACAACCTCTAAGACCTATTAACAACAATAATAATAACTTTCCAGTAAGAGATTCCGTTTCTTGGAAATCTCAGCGAAGGACGTCTGCTTGGAGTAGAACAGTTACTCATTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P41002	Cyclin-F OS=Homo sapiens OX=9606 GN=CCNF PE=1 SV=2
Q7T0L6	Cyclin-F OS=Xenopus laevis OX=8355 GN=ccnf PE=2 SV=1
Q5XGG5	Cyclin-F OS=Xenopus tropicalis OX=8364 GN=ccnf PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005479 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00134 all species →	Cyclin_N	Cyclin, N-terminal domain	Domain	Interproscan
PF02984 all species →	Cyclin_C	Cyclin, C-terminal domain	Domain	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR006671 all species →	Domain	Cyclin, N-terminal	Interproscan
IPR004367 all species →	Domain	Cyclin, C-terminal domain	Interproscan
IPR013763 all species →	Domain	Cyclin-like domain	Interproscan
IPR036915 all species →	Homologous_superfamily	Cyclin-like superfamily	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR039361 all species →	Family	Cyclin	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10177 all species →	CYCLINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000079 all species →	Biological Process	regulation of cyclin-dependent protein serine/threonine kinase activity	Interproscan
GO:0000307 all species →	Cellular Component	cyclin-dependent protein kinase holoenzyme complex	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0016538 all species →	Molecular Function	cyclin-dependent protein serine/threonine kinase regulator activity	Interproscan
GO:0044772 all species →	Biological Process	mitotic cell cycle phase transition	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10289	CCNF, FBXO1; F-box protein 1 (cyclin F)	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.