Genomic Location: Ap12:26029710...26033315
NR annotation: XP_020620453.1, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap12.2464 |
| Transcript |
| evm.model.Ap12.2464 |
| Protein |
| evm.model.Ap12.2464 |
| UniProt accession | Description |
|---|---|
| Q2KJ28 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial OS=Bos taurus OX=9913 GN=PGS1 PE=2 SV=2 |
| Q5ZHN9 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial OS=Gallus gallus OX=9031 GN=PGS1 PE=2 SV=1 |
| Q9Z2Z7 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial OS=Cricetulus griseus OX=10029 GN=PGS1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005797 (this species only) |
evm.model.Ap12.2464. This gene does have a gene model — the search simply returned no hit.| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016270 all species → | Family | CDP-alcohol phosphatidyltransferase class-II family | Interproscan |
| IPR001736 all species → | Domain | Phospholipase D/Transphosphatidylase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12586 all species → | CDP-DIACYLGLYCEROL--SERINE O-PHOSPHATIDYLTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0008444 all species → | Molecular Function | CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity | Interproscan |
| GO:0032049 all species → | Biological Process | cardiolipin biosynthetic process | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00995 | pgsA, PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase | EC:2.7.8.5 | Glycerophospholipid metabolism | ko00564 | deepkoala |
Transcript abundance of evm.model.Ap12.2464 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
