Detailed information of evm.model.Ap12.247 in Astrangia poculata

Genomic Location: Ap12:2366285...2371230
NR annotation: XP_020626649.1, pentatricopeptide repeat-containing protein 1, mitochondrial-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8C2E4Pentatricopeptide repeat-containing protein 1, mitochondrial OS=Mus musculus OX=10090 GN=Ptcd1 PE=2 SV=2
A2VD13Pentatricopeptide repeat-containing protein 1, mitochondrial OS=Rattus norvegicus OX=10116 GN=Ptcd1 PE=2 SV=1
O75127Pentatricopeptide repeat-containing protein 1, mitochondrial OS=Homo sapiens OX=9606 GN=PTCD1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0009404 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13812
all species →		PPR_3Pentatricopeptide repeat domainRepeatInterproscan
PF13041
all species →		PPR_2PPR repeat family RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002885
all species →		RepeatPentatricopeptide repeatInterproscan
IPR011990
all species →		Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47932
all species →		ATPASE EXPRESSION PROTEIN 3Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap12.247.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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