Gene detail

Detailed information of evm.model.Ap12.2478 in Astrangia poculata

Genomic Location: Ap12:26212666...26219916
NR annotation: XP_020620585.1, protein SPT2 homolog [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0V9A3	Protein SPT2 homolog OS=Xenopus tropicalis OX=8364 GN=spty2d1 PE=2 SV=1
Q6NU13	Protein SPT2 homolog OS=Xenopus laevis OX=8355 GN=spty2d1 PE=2 SV=1
Q6DGN6	Protein SPT2 homolog OS=Danio rerio OX=7955 GN=spty2d1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008432 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08243 all species →	SPT2	SPT2 chromatin protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013256 all species →	Family	Chromatin SPT2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22691 all species →	YEAST SPT2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006334 all species →	Biological Process	nucleosome assembly	Interproscan
GO:0006360 all species →	Biological Process	transcription by RNA polymerase I	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15193	SPTY2D1, SPT2; protein SPT2	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.