Detailed information of evm.model.Ap12.2480 in Astrangia poculata

Genomic Location: Ap12:26239168...26245664
NR annotation: XP_020620531.1, E3 ubiquitin-protein ligase RNF38-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8BI21E3 ubiquitin-protein ligase RNF38 OS=Mus musculus OX=10090 GN=Rnf38 PE=2 SV=2
Q4V7B8RING finger protein 44 OS=Rattus norvegicus OX=10116 GN=Rnf44 PE=2 SV=1
Q08CG8RING finger protein 44 OS=Danio rerio OX=7955 GN=rnf44 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007387 (this species only)
Ubiquitin familyE3|E3 activity RING|RING · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13639
all species →		zf-RING_2Ring finger domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46171
all species →		GH10160PInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016567
all species →		Biological Processprotein ubiquitinationInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap12.2480.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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