Gene detail

Detailed information of evm.model.Ap12.2484 in Astrangia poculata

Genomic Location: Ap12:26281408...26309317
NR annotation: XP_020620493.1, uncharacterized protein LOC110058236 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.2484

gttgtgcttgagctgtgtttagacaaagctacatgcatgtcactttggggagagaaggaaatggttcaaagagaaagttttgctgatgaagggagtggcaaggaaaaagcttccctttggagagcagttcatggttttccttcaggcagcaagcgccatcaggtcaatttacttaacccaggcagtgaactctctcaagcacagaatcttcaggttatgcgtgtggatgagaagggctgtttcctgcagtataaagagaataagaacctagtactttatccagaacttgctgttacagaaaagaaaaagaaaaagaagttgtggccttcagatgcacaagagtgggttataacacagagtggtttaattcatagtaaagctatgccacagctagtgctgtccagagctgaacatgctgtcgctgtgaagtatgcagatgcatcagtggatgggtaccctgtggtgatggcaaaaaggaatcctagtgatgccaaccaacagtggggatttagcccaacaggacagatctactctctctcaaaaccaagccttgtgctcacgtatgttggagatcatgatgttacagacatcacttctgatgaaaagccttcacagtccagctcaccagagaaagagtcattacatggcttggaaaatctacattttatggatgagccagaacttagtgatcagatttcagagggtgttggcttacagcccagtccatctccatcagacaaaaccgaggagagtactgagactggtcttgcacagcttaaagatgagttccttggtcagaaatactcacttgtacttctaccaaagaagcatggagaaggtgctcagagatgggccatcaaacaggaagacttgaagaacattggccaatggaaaaactccacaattcctaacccagagtggaacaagagagctttgtcatggccagttaatgaagacggaacatggaacatggactttgaatggcccatggaaggatttttgctgccttatgctccaccagtcaagagatcctcgcagaaaaagactgtggcaacaggaacccctgcaagattgcgagtgttaaaaaatggtgaatcggatcacaacagagctgtcatagttattggcccagacttgactaatatgctgcatgatgtcagtggaacaagttcaaacagctctttaaaaaagcacaagaggcagcgcacggtcatccgcggtagtgcacagtcttcgtcccaggctctcacacatggtgtaccacagggatccgtactctctccactactcctcctggtattcataaacgatctttccgagggagtgtcacaaccaaccacagtcgacatctttgcggatgatacaactatgagctcatcctcgccatacactgatacttctggtctatgctccaggctctgtgagagcacccgtgagcttgaggactggactagaaataaccgtttcaaactaaatatcgagaagacgaagtctatgtttgtaactgggagtaggctacgcactaagatcggtagtaccggtgtcgacgagatgaaagtctgtactagcagcggggaagccttagacaataccacaagccacaagcttcttggagtccatgttgatcaagatctaagtttcaatgaacatgtcgaacacttatgtaagaaactagcaaagcgtttaggtgttcttaggcgatctacaatagagaagcaagagcagtccggagaggaccttgctggctcctgtcatccacttgatcacaaaaggcttgagttgaatctgttcctggataggtgcactgaagctgttggtttaccatttgcggcaagaaggctgtacactgaagatgggaaagaagttagcagtctgtcagatctgcagagaaatcaattggtgtacgtgacatgtggtgagccgtggagtgacccacagatgtcttactcagagcagcagagaagggcggtgcttgctaaccttgcatctgacatctcacacattaggcagtactgtgccttgagagatccgtcagacttggttcttcaagttgacggagctgttacaaatagttctcgtctatgtgtagcacagtgtgcactgagctctgaggaacgagaaaaactagcaactggtaataatcaagaagaatcgccaatggaaaatgaagagagtccagagaatatttacagccatgcactgaatgctcatgagcgttctcatattcgtgccgagcagcgactaaagaccttgcagtggccgtgggaaaatgaaaagacgctcaaagacgacccctcagtggatgacaaagaagataatgacttttgtgatgaagtcatgttctctgatcgacaattgcagaggaaattcagacgtcaggttcttaagacccaagatgctaaaccaactgatccaagtcagaagcagagatggtccctaaataatgacggctttatcagccttaaaggcacatccctggtgctaggactcactgacgcttctaatgagggaaaagctgaagttgtactttgtaagaagaagctggaggatttcacccaaagatgggtcattgctgaagatggcttcatctaccagcgctcaaaccaacagcttgtactaacagtcaccacccctcccctggggaatgatccgttctccctggactacacccctccgcaaggttttgaaggtgcagcagttattgtggcacaccgtaaggcttgtgctaatggcaattccatgcagttgtggagatatgaccccattactggctttattgaggcttttgcttcagatacaacaaacagagaaatcactgctgccaacaagtctaacgtgtgtacatttgctgtgcttggacctcaacaagttcctcaaccgggctatatctacatgcctggtacatctaaagagacttatgtgtgtgaagcttgtgggaaaacttcccgtggaagacataaactacagcgacttcatcactaccatacaggctttgcttgtgcattaggaactgcacaagagcagggcctgaggctgagtagttcgttcaagtgcttaaacagcaaggtggatctatcaacccttgaagctgaagcgacgttggacttgtgggaacaccagctggagaggctgaggaatgaaggcagtgtacggaccatcactcgtgagctgcacatggctcagagtgtccctgccgtcagaataagggccttaaagaacggtgaaggcagcagggggcagggagagattattattggctcgagtattcatgggttacttgatcaatgcacagtgaggcttggtttagcttcagctgcccgtcgtctgtacacatgctgtggagagctgatcactgatgtacagcaactcgtcagaccatatgctacaaacactgaacagaacagtgacatggaaatacaacaaacagatgccaactatgattacggcactgataaggtccctgaagaacgactcgtgcgtaacggtcacgcggtagatgtcgttgaagcagaaaaccggccaatctccagatccaaagggacgaggctgactgcagcggaacaaagagagaaggagctgcttgagacagaggcatttgacgagttgaacatctcagatgatgagctcgcagacgatcagtcctctgggaatgtaactttccgtgtcagtgacggacgtactggctcagtgcctgtcataagcaataagcagcagcagagtctccccaggtgggacgctcggtggcctattgatgtctgggtgtcctgtggtgaaccgtttgttcctttggaagaggctgataagcagtacctgttgtcgatgaagcacagagaagagagaacctgggtacaagcatatcttgaccaagagaaacacgtgctaagacacatgcagggacgtcgaatcactggaaggagtcctccatcctccccaaggggggtgggtttgacgaatgcatggcacgaacctaccagggctgaggaggagaaggaagaggccattagcgaactcaagagtcatctccaaggagtaaaatcacggcaaaatcaaggtgaagctgcactgtgcaaaactgcaaaggaatctacacagcgactttacatgaaaccgaaaacggttcgagttaaggcagttccgaatggcgagaccaaagaacgtgctgtagttgtgtttggagcaactattgaagagttattgaacgcatgtaccactcgtttggacctaagtagcgccgctagaagactctttacactggccggagatgagataacacattttggcgatatagaaagagatcaatatgtttgtgtgagctgtggtgaaggattccttcgagcaagagatcgtctgcatcgtcaagagctgaaggccacatggtctcgtttgaacagacagtctggtggaacagtaatacccggtgggggaccggtgacgagaaacagcgtgacattcgataacacaatcctggctctacctgccccagtctctcctccaccgccgtcacgtgttcctccttcacccacaagacagatgtcagttcaccgagtgtccacccgtcattga

Transcript

evm.model.Ap12.2484

TTGTTGTGCTTGAGCTGTGTTTAGACAAAGCTACATGCATGTCACTTTGGGGAGAGAAGGAAATGGTTCAAAGAGAAAGTTTTGCTGATGAAGGGAGTGGCAAGGAAAAAGCTTCCCTTTGGAGAGCAGTTCATGGTTTTCCTTCAGGCAGCAAGCGCCATCAGGTCAATTTACTTAACCCAGGCAGTGAACTCTCTCAAGCACAGAATCTTCAGGTTATGCGTGTGGATGAGAAGGGCTGTTTCCTGCAGTATAAAGAGAATAAGAACCTAGTACTTTATCCAGAACTTGCTGTTACAGAAAAGAAAAAGAAAAAGAAGTTGTGGCCTTCAGATGCACAAGAGTGGGTTATAACACAGAGTGGTTTAATTCATAGTAAAGCTATGCCACAGCTAGTGCTGTCCAGAGCTGAACATGCTGTCGCTGTGAAGTATGCAGATGCATCAGTGGATGGGTACCCTGTGGTGATGGCAAAAAGGAATCCTAGTGATGCCAACCAACAGTGGGGATTTAGCCCAACAGGACAGATCTACTCTCTCTCAAAACCAAGCCTTGTGCTCACGTATGTTGGAGATCATGATGTTACAGACATCACTTCTGATGAAAAGCCTTCACAGTCCAGCTCACCAGAGAAAGAGTCATTACATGGCTTGGAAAATCTACATTTTATGGATGAGCCAGAACTTAGTGATCAGATTTCAGAGGGTGTTGGCTTACAGCCCAGTCCATCTCCATCAGACAAAACCGAGGAGAGTACTGAGACTGGTCTTGCACAGCTTAAAGATGAGTTCCTTGGTCAGAAATACTCACTTGTACTTCTACCAAAGAAGCATGGAGAAGGTGCTCAGAGATGGGCCATCAAACAGGAAGACTTGAAGAACATTGGCCAATGGAAAAACTCCACAATTCCTAACCCAGAGTGGAACAAGAGAGCTTTGTCATGGCCAGTTAATGAAGACGGAACATGGAACATGGACTTTGAATGGCCCATGGAAGGATTTTTGCTGCCTTATGCTCCACCAGTCAAGAGATCCTCGCAGAAAAAGACTGTGGCAACAGGAACCCCTGCAAGATTGCGAGTGTTAAAAAATGGTGAATCGGATCACAACAGAGCTGTCATAGTTATTGGCCCAGACTTGACTAATATGCTGCATGATGTCAGTGGAACAAGTTCAAACAGCTCTTTAAAAAAGCACAAGAGGCAGCGCACGGTCATCCGCGGTAGTGCACAGTCTTCGTCCCAGGCTCTCACACATGGTGTACCACAGGGATCCGTACTCTCTCCACTACTCCTCCTGGTATTCATAAACGATCTTTCCGAGGGAGTGTCACAACCAACCACAGTCGACATCTTTGCGGATGATACAACTATGAGCTCATCCTCGCCATACACTGATACTTCTGGTCTATGCTCCAGGCTCTGTGAGAGCACCCGTGAGCTTGAGGACTGGACTAGAAATAACCGTTTCAAACTAAATATCGAGAAGACGAAGTCTATGTTTGTAACTGGGAGTAGGCTACGCACTAAGATCGGTAGTACCGGTGTCGACGAGATGAAAGTCTGTACTAGCAGCGGGGAAGCCTTAGACAATACCACAAGCCACAAGCTTCTTGGAGTCCATGTTGATCAAGATCTAAGTTTCAATGAACATGTCGAACACTTATGTAAGAAACTAGCAAAGCGTTTAGGTGTTCTTAGGCGATCTACAATAGAGAAGCAAGAGCAGTCCGGAGAGGACCTTGCTGGCTCCTGTCATCCACTTGATCACAAAAGGCTTGAGTTGAATCTGTTCCTGGATAGGTGCACTGAAGCTGTTGGTTTACCATTTGCGGCAAGAAGGCTGTACACTGAAGATGGGAAAGAAGTTAGCAGTCTGTCAGATCTGCAGAGAAATCAATTGGTGTACGTGACATGTGGTGAGCCGTGGAGTGACCCACAGATGTCTTACTCAGAGCAGCAGAGAAGGGCGGTGCTTGCTAACCTTGCATCTGACATCTCACACATTAGGCAGTACTGTGCCTTGAGAGATCCGTCAGACTTGGTTCTTCAAGTTGACGGAGCTGTTACAAATAGTTCTCGTCTATGTGTAGCACAGTGTGCACTGAGCTCTGAGGAACGAGAAAAACTAGCAACTGGTAATAATCAAGAAGAATCGCCAATGGAAAATGAAGAGAGTCCAGAGAATATTTACAGCCATGCACTGAATGCTCATGAGCGTTCTCATATTCGTGCCGAGCAGCGACTAAAGACCTTGCAGTGGCCGTGGGAAAATGAAAAGACGCTCAAAGACGACCCCTCAGTGGATGACAAAGAAGATAATGACTTTTGTGATGAAGTCATGTTCTCTGATCGACAATTGCAGAGGAAATTCAGACGTCAGGTTCTTAAGACCCAAGATGCTAAACCAACTGATCCAAGTCAGAAGCAGAGATGGTCCCTAAATAATGACGGCTTTATCAGCCTTAAAGGCACATCCCTGGTGCTAGGACTCACTGACGCTTCTAATGAGGGAAAAGCTGAAGTTGTACTTTGTAAGAAGAAGCTGGAGGATTTCACCCAAAGATGGGTCATTGCTGAAGATGGCTTCATCTACCAGCGCTCAAACCAACAGCTTGTACTAACAGTCACCACCCCTCCCCTGGGGAATGATCCGTTCTCCCTGGACTACACCCCTCCGCAAGGTTTTGAAGGTGCAGCAGTTATTGTGGCACACCGTAAGGCTTGTGCTAATGGCAATTCCATGCAGTTGTGGAGATATGACCCCATTACTGGCTTTATTGAGGCTTTTGCTTCAGATACAACAAACAGAGAAATCACTGCTGCCAACAAGTCTAACGTGTGTACATTTGCTGTGCTTGGACCTCAACAAGTTCCTCAACCGGGCTATATCTACATGCCTGGTACATCTAAAGAGACTTATGTGTGTGAAGCTTGTGGGAAAACTTCCCGTGGAAGACATAAACTACAGCGACTTCATCACTACCATACAGGCTTTGCTTGTGCATTAGGAACTGCACAAGAGCAGGGCCTGAGGCTGAGTAGTTCGTTCAAGTGCTTAAACAGCAAGGTGGATCTATCAACCCTTGAAGCTGAAGCGACGTTGGACTTGTGGGAACACCAGCTGGAGAGGCTGAGGAATGAAGGCAGTGTACGGACCATCACTCGTGAGCTGCACATGGCTCAGAGTGTCCCTGCCGTCAGAATAAGGGCCTTAAAGAACGGTGAAGGCAGCAGGGGGCAGGGAGAGATTATTATTGGCTCGAGTATTCATGGGTTACTTGATCAATGCACAGTGAGGCTTGGTTTAGCTTCAGCTGCCCGTCGTCTGTACACATGCTGTGGAGAGCTGATCACTGATGTACAGCAACTCGTCAGACCATATGCTACAAACACTGAACAGAACAGTGACATGGAAATACAACAAACAGATGCCAACTATGATTACGGCACTGATAAGGTCCCTGAAGAACGACTCGTGCGTAACGGTCACGCGGTAGATGTCGTTGAAGCAGAAAACCGGCCAATCTCCAGATCCAAAGGGACGAGGCTGACTGCAGCGGAACAAAGAGAGAAGGAGCTGCTTGAGACAGAGGCATTTGACGAGTTGAACATCTCAGATGATGAGCTCGCAGACGATCAGTCCTCTGGGAATGTAACTTTCCGTGTCAGTGACGGACGTACTGGCTCAGTGCCTGTCATAAGCAATAAGCAGCAGCAGAGTCTCCCCAGGTGGGACGCTCGGTGGCCTATTGATGTCTGGGTGTCCTGTGGTGAACCGTTTGTTCCTTTGGAAGAGGCTGATAAGCAGTACCTGTTGTCGATGAAGCACAGAGAAGAGAGAACCTGGGTACAAGCATATCTTGACCAAGAGAAACACGTGCTAAGACACATGCAGGGACGTCGAATCACTGGAAGGAGTCCTCCATCCTCCCCAAGGGGGGTGGGTTTGACGAATGCATGGCACGAACCTACCAGGGCTGAGGAGGAGAAGGAAGAGGCCATTAGCGAACTCAAGAGTCATCTCCAAGGAGTAAAATCACGGCAAAATCAAGGTGAAGCTGCACTGTGCAAAACTGCAAAGGAATCTACACAGCGACTTTACATGAAACCGAAAACGGTTCGAGTTAAGGCAGTTCCGAATGGCGAGACCAAAGAACGTGCTGTAGTTGTGTTTGGAGCAACTATTGAAGAGTTATTGAACGCATGTACCACTCGTTTGGACCTAAGTAGCGCCGCTAGAAGACTCTTTACACTGGCCGGAGATGAGATAACACATTTTGGCGATATAGAAAGAGATCAATATGTTTGTGTGAGCTGTGGTGAAGGATTCCTTCGAGCAAGAGATCGTCTGCATCGTCAAGAGCTGAAGGCCACATGGTCTCGTTTGAACAGACAGTCTGGTGGAACAGTAATACCCGGTGGGGGACCGGTGACGAGAAACAGCGTGACATTCGATAACACAATCCTGGCTCTACCTGCCCCAGTCTCTCCTCCACCGCCGTCACGTGTTCCTCCTTCACCCACAAGACAGATGTCAGTTCACCGAGTGTCCACCCGTCATTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
M0R2J8	Doublecortin domain-containing protein 1 OS=Homo sapiens OX=9606 GN=DCDC1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003002 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03607 all species →	DCX	Doublecortin	Family	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003533 all species →	Domain	Doublecortin domain	Interproscan
IPR036572 all species →	Homologous_superfamily	Doublecortin domain superfamily	Interproscan
IPR035992 all species →	Homologous_superfamily	Ricin B-like lectins	Interproscan
IPR000772 all species →	Domain	Ricin B, lectin domain	Interproscan
IPR043188 all species →	Family	Doublecortin domain-containing protein 1	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46302 all species →	DOUBLECORTIN DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0030496 all species →	Cellular Component	midbody	Interproscan
GO:1902412 all species →	Biological Process	regulation of mitotic cytokinesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23400	DCDC1; doublecortin domain-containing protein 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.