Gene detail

Detailed information of evm.model.Ap12.249 in Astrangia poculata

Genomic Location: Ap12:2396372...2399215
NR annotation: KAJ7340372.1, Anoctamin-4 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.249

atggagatgtctgtttctgatactccgggacaaggtgacgtacgtcttgatatagaagagccagcatcacccactcaggcaagtgaggtaatggacgatgatcagtctgcaggcgaaggcgacgtccttcttgatgttagcgaggcatcactggcatctcaccctgagagaaaagtggagataagcgatgatactacaggtgaaggggacggcaacagagctgctgaaacagagtcatctttccaggctgagccaaacaagaaaattgacttcgttctcgtgtgtgaacgatgccaggaggaggaagatcaaaatgaggaatccaagaaaaaagcagacgaccaggagcaaatcagaaaaacttttgagggaaacctcgggttggaaataattggacggacagaaacagcaccttctcctaatgtcgaaggagaattaaagaagttgtatgaacggtgcctccgacgctgtggaagaccggtcaagaagaaacccgaaagcagactccattttgtccttctacacgctccgtgggaattgctggccaaacgagcagatgaaatgcgtctgaaagttccattccatgaaagcgacatcacctctgaatcctggatagagaagaaactcggtcccgagagaatgaagtcattaagacggagaaatccttttgtggtcaaggatcctacgatagaagaaaaaccaacatacttcatggcagactttagagaagacagaatcaccatgttcgccaaccaccagaacaaggagaccttctttgaagatgccgatcgtgcctacattgtgcagcagatttgctacagtgctccttttggtaacggtacacttgacgttgggctgaagacgttaatccacgatggcgtataccaggcagggtattcacttcatgatggtcctgttctccttgaagctgctgatgggcaacccactaatgaccgacaacgattgaagcgcgactgggccaggtttggaagagtgttcaaatttcagccttatggagcaatcaaggattactttggcagtgagattgccttgtactttgcctggctaggattttacacggcctggttagtacctcttgccatcgtcggtctaactgtattcttctatggaatcggttcagctggtagtcacatcccagtccaagatgtttgcgacgagaaaaaccgtgggcgatggtttatgtgcccattgtgtgacaagcattgcagctactgggacttagcctcgaccacatgcatctatgcctacgtcacccatttcttcgacaacgctggcacagttgttctggctctgatcgcgtcaatttggggcacgttattccttgagttttggaagcgtcaggctacacttgctcaggagtggcacactgatgatcttgagaaaggcgaagagacactccgtccagaatacttagctgaagtgaaagatttgccgccagagtatcaagtgaagagcgaagttaccgggaagatggagccccgtctctccaaactcgtagtgtacagtcgctatagcacagcctttagcatcatactattcatgatcgctctggtcattgccgctgtctttggggtcattgtatatcgagctgcagtattcgcctccttgagtggaagctcgagtgctagaatggtcacttctgccacagctggtttcctcaatcttgtcgccatcaacctgttgaagttcgtctacagcaaattggcagtctggttgaccaactgggagaatccccctactcgttccgactacgaatacagcttcacctggaaaatgtacacgttccagtttgttaacacctactcgtctgttttttacattgcctttttcaagtccgggcatgttattggaacgccaagcaggtacaagcgacttgctggtgaatttcgcttagatggctgcagcgagcaaggatgctttttggatctttgtgtccagcttctgttcatcatggtgggacagcaaatcattagaaatgtcctggaaatccttatcccgtaa

Transcript

evm.model.Ap12.249

ATGGAGATGTCTGTTTCTGATACTCCGGGACAAGGTGACGTACGTCTTGATATAGAAGAGCCAGCATCACCCACTCAGGCAAGTGAGGTAATGGACGATGATCAGTCTGCAGGCGAAGGCGACGTCCTTCTTGATGTTAGCGAGGCATCACTGGCATCTCACCCTGAGAGAAAAGTGGAGATAAGCGATGATACTACAGGTGAAGGGGACGGCAACAGAGCTGCTGAAACAGAGTCATCTTTCCAGGCTGAGCCAAACAAGAAAATTGACTTCGTTCTCGTGTGTGAACGATGCCAGGAGGAGGAAGATCAAAATGAGGAATCCAAGAAAAAAGCAGACGACCAGGAGCAAATCAGAAAAACTTTTGAGGGAAACCTCGGGTTGGAAATAATTGGACGGACAGAAACAGCACCTTCTCCTAATGTCGAAGGAGAATTAAAGAAGTTGTATGAACGGTGCCTCCGACGCTGTGGAAGACCGGTCAAGAAGAAACCCGAAAGCAGACTCCATTTTGTCCTTCTACACGCTCCGTGGGAATTGCTGGCCAAACGAGCAGATGAAATGCGTCTGAAAGTTCCATTCCATGAAAGCGACATCACCTCTGAATCCTGGATAGAGAAGAAACTCGGTCCCGAGAGAATGAAGTCATTAAGACGGAGAAATCCTTTTGTGGTCAAGGATCCTACGATAGAAGAAAAACCAACATACTTCATGGCAGACTTTAGAGAAGACAGAATCACCATGTTCGCCAACCACCAGAACAAGGAGACCTTCTTTGAAGATGCCGATCGTGCCTACATTGTGCAGCAGATTTGCTACAGTGCTCCTTTTGGTAACGGTACACTTGACGTTGGGCTGAAGACGTTAATCCACGATGGCGTATACCAGGCAGGGTATTCACTTCATGATGGTCCTGTTCTCCTTGAAGCTGCTGATGGGCAACCCACTAATGACCGACAACGATTGAAGCGCGACTGGGCCAGGTTTGGAAGAGTGTTCAAATTTCAGCCTTATGGAGCAATCAAGGATTACTTTGGCAGTGAGATTGCCTTGTACTTTGCCTGGCTAGGATTTTACACGGCCTGGTTAGTACCTCTTGCCATCGTCGGTCTAACTGTATTCTTCTATGGAATCGGTTCAGCTGGTAGTCACATCCCAGTCCAAGATGTTTGCGACGAGAAAAACCGTGGGCGATGGTTTATGTGCCCATTGTGTGACAAGCATTGCAGCTACTGGGACTTAGCCTCGACCACATGCATCTATGCCTACGTCACCCATTTCTTCGACAACGCTGGCACAGTTGTTCTGGCTCTGATCGCGTCAATTTGGGGCACGTTATTCCTTGAGTTTTGGAAGCGTCAGGCTACACTTGCTCAGGAGTGGCACACTGATGATCTTGAGAAAGGCGAAGAGACACTCCGTCCAGAATACTTAGCTGAAGTGAAAGATTTGCCGCCAGAGTATCAAGTGAAGAGCGAAGTTACCGGGAAGATGGAGCCCCGTCTCTCCAAACTCGTAGTGTACAGTCGCTATAGCACAGCCTTTAGCATCATACTATTCATGATCGCTCTGGTCATTGCCGCTGTCTTTGGGGTCATTGTATATCGAGCTGCAGTATTCGCCTCCTTGAGTGGAAGCTCGAGTGCTAGAATGGTCACTTCTGCCACAGCTGGTTTCCTCAATCTTGTCGCCATCAACCTGTTGAAGTTCGTCTACAGCAAATTGGCAGTCTGGTTGACCAACTGGGAGAATCCCCCTACTCGTTCCGACTACGAATACAGCTTCACCTGGAAAATGTACACGTTCCAGTTTGTTAACACCTACTCGTCTGTTTTTTACATTGCCTTTTTCAAGTCCGGGCATGTTATTGGAACGCCAAGCAGGTACAAGCGACTTGCTGGTGAATTTCGCTTAGATGGCTGCAGCGAGCAAGGATGCTTTTTGGATCTTTGTGTCCAGCTTCTGTTCATCATGGTGGGACAGCAAATCATTAGAAATGTCCTGGAAATCCTTATCCCGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BYT9	Anoctamin-3 OS=Homo sapiens OX=9606 GN=ANO3 PE=1 SV=2
A2AHL1	Anoctamin-3 OS=Mus musculus OX=10090 GN=Ano3 PE=1 SV=1
Q75V66	Anoctamin-5 OS=Homo sapiens OX=9606 GN=ANO5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000338 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16178 all species →	Anoct_dimer	Dimerisation domain of Ca+-activated chloride-channel, anoctamin	Family	Interproscan
PF04547 all species →	Anoctamin	Calcium-activated chloride channel	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032394 all species →	Domain	Anoctamin, dimerisation domain	Interproscan
IPR049452 all species →	Domain	Anoctamin, transmembrane domain	Interproscan
IPR007632 all species →	Family	Anoctamin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12308 all species →	ANOCTAMIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0005254 all species →	Molecular Function	chloride channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:1902476 all species →	Biological Process	chloride transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap12.249.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.