Gene detail

Detailed information of evm.model.Ap12.2510 in Astrangia poculata

Genomic Location: Ap12:26573121...26583633
NR annotation: XP_020620747.1, MAP kinase-activating death domain protein-like isoform X3 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.2510

atgggctcaggaacccgagccatgcagacaagactcatagactatcttgttgttgttggtgtacgcaagccaactctcgactcgaccgaaacaccggagcttttgcgtcgctttccgcagaaagaccacaaggattttactctaccaggagacgtggttttcttctgccagcctgaaggatgcagcacagtgtcaaagaaattctctcttcgagaagcgaactcgtttgcgttcactttaaccgataaagactccggcaaggttcgttatgggatttgtgtcaatgtgtttcggccttgttcgaattttatacacaaagaacgaggtgatggcaaagaaaatacactgaccgttcggaaaagatcccgaagttttcacaacaaacgggatttttgtatgagcttaacatccttgtgtatcatatcgcatcatccattttttccaacctttagggagtgcctattttttcttcgcaaaatgatcgactcacgaatcggtggcaaaggtctcgataagaacgacaacgttgtaccaggcttacatagctggtctgtgtttacttgcacagaggatcagaaaacgagtcatttggcccgcgatatggaagaagtagaaacatggattcaacgtctatttctcgctcaggcgcccatttcaggcagaacaagagtagaagtacatcttcattcgcccgagtcatatccccctttgaccttcgctatgccggaattgaaccgattttcgctcgtagactttcccattcatattcctttggagcttcttggagtagaaacatgtttgaaggttttaacgtgtattttactcgagcacaaggttgtgatccagtcccgagattacaatgccctgaccatgagtgtaatggcgttgacatctcttctgtaccctttggagtacatgtttccagtaatccctttactgcccacgtgcatgaacaatgccgagcagctgttattggctcccacgccatatgtgattggtgtgccggcaagcttctttcgttacaagtctgaaggatttcagatgcctggggatgtttgggtggttgatttggattctaacaagatcacagttcctttgacagcagatgagttgccgccattacctcaacctgaaggtgcagcgctgatcaagagcttgaagttggctcttcaagctctcagtatgcctcctcagactgtgacaaatttagatcactcttccctcctggatgaccttagacctctgacccctaatggtgttaatggtatctcagggccagtatatgggaatgacgtggatgcagtagacattgccgtcagagttgccatggtgaattttttcacatcagcaaacattcttggaggtatcaaagcacatacaaggaccctgaggctgtattctcgacctgttgtggcactccagagagggcccttcctgaaatcaagaccagagctatcagactttgttgcgaggctttcggaaagccagtcactagaatattatggagagtggctagtgaatccatcaaacaaagtttttttgaagattatcaaaggtgtccacgatcctcagatcatcggtgacaaagccaaatggtttgctgatgacctagaacctgtcgtctatcaagttttcgactcaaactcaaagatctacatggagccttggattgacgtggactatgaaccaagtttgatttttgacgaggaggaggtcactcccaacaatgatgaagatgacgatagtagcagttgtcacagctccgtcagcgacctcgtacaaaggatgatcagtggtgacataaatgggtcctcacctatgggcccccatgtacccccatttacccctgtgagggcatcatctccgatgccagatttgcaggcgtcgtttgctttgccaggcggcacagtagtggtgggcaacatgctcctggacaagaagaagagatctggttcaaggacggatcaatctgacgcaggcaccacagactctgcagcttgttctatgagcagtggtgactcatgctctgtgcaagaggatgacagtgaagattttacgtattctgtgtccaaccctcccacacctaatcagacaagaaagaaaatgacatcagatgcagaaagtgaaaacacttttgtctctggcacctcctcgcaatccagctcatccacgcataccatgtcaccaacagagaagcagaatagtatgtttaccaacagtactgaagctgtcctaggtctgtggaacagtctaaaaaaatccacattcaatgtgacaaagacagttcagcaggagaatgtagaaaactctccagtaaatggttttgccaagagaattcctacaaaccctccgccaaacaaactctctccacaagaagaaaaacctttctttccttttccaggaatgaggcaaaaaccaccagtgcctggggaaagaattcctggaagacctccattgacaaaacaaacttctacagaaaagactctgcacagtgaaaatcaacagtttctgaaggaaattgtccgtagtgtgatgaaaggtgatggtgtgggctggcttgtatcaaagaaactccgcagactaatgacagatgaagctctaagagccatggttgccaatcgtctttacaatgctccctctgccgacaagagcacagatgctgtggatgacatgctcatcagtagcataattcctccatccttgctgacacagtatacacaggggtcgcaaagcacagggctcactgctaagacgaatcttgacacaaaacaagatgctcataattctgttgttagtaatctcattcatttaatctgcttctaa

Transcript

evm.model.Ap12.2510

ATGGGCTCAGGAACCCGAGCCATGCAGACAAGACTCATAGACTATCTTGTTGTTGTTGGTGTACGCAAGCCAACTCTCGACTCGACCGAAACACCGGAGCTTTTGCGTCGCTTTCCGCAGAAAGACCACAAGGATTTTACTCTACCAGGAGACGTGGTTTTCTTCTGCCAGCCTGAAGGATGCAGCACAGTGTCAAAGAAATTCTCTCTTCGAGAAGCGAACTCGTTTGCGTTCACTTTAACCGATAAAGACTCCGGCAAGGTTCGTTATGGGATTTGTGTCAATGTGTTTCGGCCTTGTTCGAATTTTATACACAAAGAACGAGGTGATGGCAAAGAAAATACACTGACCGTTCGGAAAAGATCCCGAAGTTTTCACAACAAACGGGATTTTTGTATGAGCTTAACATCCTTGTGTATCATATCGCATCATCCATTTTTTCCAACCTTTAGGGAGTGCCTATTTTTTCTTCGCAAAATGATCGACTCACGAATCGGTGGCAAAGGTCTCGATAAGAACGACAACGTTGTACCAGGCTTACATAGCTGGTCTGTGTTTACTTGCACAGAGGATCAGAAAACGAGTCATTTGGCCCGCGATATGGAAGAAGTAGAAACATGGATTCAACGTCTATTTCTCGCTCAGGCGCCCATTTCAGGCAGAACAAGAGTAGAAGTACATCTTCATTCGCCCGAGTCATATCCCCCTTTGACCTTCGCTATGCCGGAATTGAACCGATTTTCGCTCGTAGACTTTCCCATTCATATTCCTTTGGAGCTTCTTGGAGTAGAAACATGTTTGAAGGTTTTAACGTGTATTTTACTCGAGCACAAGGTTGTGATCCAGTCCCGAGATTACAATGCCCTGACCATGAGTGTAATGGCGTTGACATCTCTTCTGTACCCTTTGGAGTACATGTTTCCAGTAATCCCTTTACTGCCCACGTGCATGAACAATGCCGAGCAGCTGTTATTGGCTCCCACGCCATATGTGATTGGTGTGCCGGCAAGCTTCTTTCGTTACAAGTCTGAAGGATTTCAGATGCCTGGGGATGTTTGGGTGGTTGATTTGGATTCTAACAAGATCACAGTTCCTTTGACAGCAGATGAGTTGCCGCCATTACCTCAACCTGAAGGTGCAGCGCTGATCAAGAGCTTGAAGTTGGCTCTTCAAGCTCTCAGTATGCCTCCTCAGACTGTGACAAATTTAGATCACTCTTCCCTCCTGGATGACCTTAGACCTCTGACCCCTAATGGTGTTAATGGTATCTCAGGGCCAGTATATGGGAATGACGTGGATGCAGTAGACATTGCCGTCAGAGTTGCCATGGTGAATTTTTTCACATCAGCAAACATTCTTGGAGGTATCAAAGCACATACAAGGACCCTGAGGCTGTATTCTCGACCTGTTGTGGCACTCCAGAGAGGGCCCTTCCTGAAATCAAGACCAGAGCTATCAGACTTTGTTGCGAGGCTTTCGGAAAGCCAGTCACTAGAATATTATGGAGAGTGGCTAGTGAATCCATCAAACAAAGTTTTTTTGAAGATTATCAAAGGTGTCCACGATCCTCAGATCATCGGTGACAAAGCCAAATGGTTTGCTGATGACCTAGAACCTGTCGTCTATCAAGTTTTCGACTCAAACTCAAAGATCTACATGGAGCCTTGGATTGACGTGGACTATGAACCAAGTTTGATTTTTGACGAGGAGGAGGTCACTCCCAACAATGATGAAGATGACGATAGTAGCAGTTGTCACAGCTCCGTCAGCGACCTCGTACAAAGGATGATCAGTGGTGACATAAATGGGTCCTCACCTATGGGCCCCCATGTACCCCCATTTACCCCTGTGAGGGCATCATCTCCGATGCCAGATTTGCAGGCGTCGTTTGCTTTGCCAGGCGGCACAGTAGTGGTGGGCAACATGCTCCTGGACAAGAAGAAGAGATCTGGTTCAAGGACGGATCAATCTGACGCAGGCACCACAGACTCTGCAGCTTGTTCTATGAGCAGTGGTGACTCATGCTCTGTGCAAGAGGATGACAGTGAAGATTTTACGTATTCTGTGTCCAACCCTCCCACACCTAATCAGACAAGAAAGAAAATGACATCAGATGCAGAAAGTGAAAACACTTTTGTCTCTGGCACCTCCTCGCAATCCAGCTCATCCACGCATACCATGTCACCAACAGAGAAGCAGAATAGTATGTTTACCAACAGTACTGAAGCTGTCCTAGGTCTGTGGAACAGTCTAAAAAAATCCACATTCAATGTGACAAAGACAGTTCAGCAGGAGAATGTAGAAAACTCTCCAGTAAATGGTTTTGCCAAGAGAATTCCTACAAACCCTCCGCCAAACAAACTCTCTCCACAAGAAGAAAAACCTTTCTTTCCTTTTCCAGGAATGAGGCAAAAACCACCAGTGCCTGGGGAAAGAATTCCTGGAAGACCTCCATTGACAAAACAAACTTCTACAGAAAAGACTCTGCACAGTGAAAATCAACAGTTTCTGAAGGAAATTGTCCGTAGTGTGATGAAAGGTGATGGTGTGGGCTGGCTTGTATCAAAGAAACTCCGCAGACTAATGACAGATGAAGCTCTAAGAGCCATGGTTGCCAATCGTCTTTACAATGCTCCCTCTGCCGACAAGAGCACAGATGCTGTGGATGACATGCTCATCAGTAGCATAATTCCTCCATCCTTGCTGACACAGTATACACAGGGGTCGCAAAGCACAGGGCTCACTGCTAAGACGAATCTTGACACAAAACAAGATGCTCATAATTCTGTTGTTAGTAATCTCATTCATTTAATCTGCTTCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O08873	MAP kinase-activating death domain protein OS=Rattus norvegicus OX=10116 GN=Madd PE=1 SV=1
Q8WXG6	MAP kinase-activating death domain protein OS=Homo sapiens OX=9606 GN=MADD PE=1 SV=2
Q80U28	MAP kinase-activating death domain protein OS=Mus musculus OX=10090 GN=Madd PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002435 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03456 all species →	uDENN	uDENN domain	Domain	Interproscan
PF02141 all species →	DENN	DENN (AEX-3) domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039980 all species →	Family	MAP kinase-activating death domain protein	Interproscan
IPR005113 all species →	Domain	uDENN domain	Interproscan
IPR043153 all species →	Homologous_superfamily	DENN domain, C-terminal lobe	Interproscan
IPR001194 all species →	Domain	cDENN domain	Interproscan
IPR037516 all species →	Domain	Tripartite DENN domain	Interproscan
IPR005112 all species →	Domain	dDENN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13008 all species →	MAP-KINASE ACTIVATING DEATH DOMAIN PROTEIN MADD /DENN/AEX-3 C.ELEGANS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0032483 all species →	Biological Process	regulation of Rab protein signal transduction	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap12.2510.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.