Gene detail

Detailed information of evm.model.Ap12.252 in Astrangia poculata

Genomic Location: Ap12:2426053...2432956
NR annotation: XP_020626575.1, LOW QUALITY PROTEIN: anoctamin-4-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.252

atggaaagaggatcgtattcaaggctagaccaaatcgaccaagttcagatcgagttgactgaacagccaacagcatctttcggtaacgaaccaaacagatcgctccagagtagtagtacacaggaaaagtacatagattacgtgttagtccacaagaccctaaaggatatgtgtgagcttgatgaagaatcaattcatgaaataagaaagcgcaaggcatggagacatacgtttgaaagttgtcttgaaaataagtttgggctggtcttacagcgcaagacggtgaccattgaagaggatccaggaaaagaacgccactttacactgattcacgcgccttggaatgtgttggcagggaatgcagagcgaataaaacttaaggttcctcttcaagtcaacgacgtggtcttcacaacttggctggaagataccattggtgccacaagagtagaaaaactgaaaagcaaaaatcctttagaagtacataattccactttagaagaaaagccaaatttctttatggctccgtttttgcaagatcgcatggacgagtttgtgaactatgaggacaaggaacactttttcagtgttacggatcgccactatattgttcagaatttgcttaaaaacgcacgctttgcaaggggaccgaatggagtggggctacagaagctcctcttagatcaagtctacatcgctgggtactcacttcatgatgggccagactccagagaagaaggagaagctcctacgaatgatcgacagaaattgaaggaagaatgggcacgatttggaagaagtttcaagtaccaaccctacgatgccatcaaagattacttcggtcatgaagtgggcctgtactttgcatggctcggattttacactaccatgctggttcctcttgccattgttggctttcttgtgtttatctatggaattgcatcggcaggctcccacattccggtccgtgacctttgtgatgaagaaaacaaaggccgttggtacatgtgcccactatgcgacaaacagtgcagctactggaatctggccccagacacttgcatgtacgcttacatcacgcatttttttgacaacgacggaacagtgcttcttgcctttgtggcgtccatttgggccaccttgttccttgaattttggaaacgtcgtcaagcgacacttgctcaggaatggcacacaaccgatttcgaggaagatgaagaacaacttcgtcctgaatacaagaaaagtttgccagatgaacaactgcaactgctcctgtttaaacgaaacccagaaaccggcaaaatagaacccgcggtatcaaaatttaagacgtaccgcagatatggcactgtcgttagtgttgttattttcatgattcttctggtcctcggggcagccataggcgtagtggtgtaccgtgcggcagtgtttgctgtcttgagcagcagtggtgacaacggggttcaaaaacgggctcgtatcataacaacagcatctgcagcatttctaaatctcatagtaataatgttgttgaccaaagtttacatcaagctcgcagtatggttgactgactgggaaaacccaccgacagagagcgcttataaagacagctttacatggaagatgtcttccttccagttcgtaaacaactattcggccatattttatatcgctttctttaaatcggatctgatagtcggaacaccaggaaggtacagaagagtgttagggaagtatcgactggatggctgcagtgagcagggatgctttttggaacttgctgttcaacttttgattatcatggtgggaaagcaaattttcttcaacatatttgagatggcaatgccatatctgagtttgataaagaatcgccgaaagaaaaagaatctagacgattgccctcaatacgaaaaagacttcgatctgactgcatgtgaaaagcattatatgttctgggaatacctggaaatagttttgcagtacggctttgtaacaatgtttgtcgctgcttttcccctcggtccactgttcgcgctaatcaacactatcattgagattcgaatagacgctaccaagttcttatgcttctttcgccgtccggacgttgcccgcgtggaggacataggagcctggtacgatgtcctcgagacagtcaccagggcctcggtgttggcaaacgcgttcatactggcgtttacttcagagttcatcccaaaacttctttacatggttatgtacgctcctgaccgccatcccacagggcgtggtactttgaaggggtatgtcaattttaccctttcctccattgatttgaagactctctactcatgggaaaatggtacccagccagacaacccgatggaaaacttaaactatacaagaaactactgcaggtaccgtggctaccatgacaacacctacccatacggctactccaggacgtactggcatctcctcaccgctcggctcgcattcgttttcgtgtttcaattcatagtctacaccatcactagttttatagcttggcttgtgcctgacaggccggatgagctcgagttcaaggtggaaagagagaaacaagtcattaagtcagcgtttcatgatgatgatgacgacgactacagtgactttgaagaagacgacgacgaagacgatgacacagtggtatttgaagacgccaaacaagaggttgatgccgaagagtaa

Transcript

evm.model.Ap12.252

ATGGAAAGAGGATCGTATTCAAGGCTAGACCAAATCGACCAAGTTCAGATCGAGTTGACTGAACAGCCAACAGCATCTTTCGGTAACGAACCAAACAGATCGCTCCAGAGTAGTAGTACACAGGAAAAGTACATAGATTACGTGTTAGTCCACAAGACCCTAAAGGATATGTGTGAGCTTGATGAAGAATCAATTCATGAAATAAGAAAGCGCAAGGCATGGAGACATACGTTTGAAAGTTGTCTTGAAAATAAGTTTGGGCTGGTCTTACAGCGCAAGACGGTGACCATTGAAGAGGATCCAGGAAAAGAACGCCACTTTACACTGATTCACGCGCCTTGGAATGTGTTGGCAGGGAATGCAGAGCGAATAAAACTTAAGGTTCCTCTTCAAGTCAACGACGTGGTCTTCACAACTTGGCTGGAAGATACCATTGGTGCCACAAGAGTAGAAAAACTGAAAAGCAAAAATCCTTTAGAAGTACATAATTCCACTTTAGAAGAAAAGCCAAATTTCTTTATGGCTCCGTTTTTGCAAGATCGCATGGACGAGTTTGTGAACTATGAGGACAAGGAACACTTTTTCAGTGTTACGGATCGCCACTATATTGTTCAGAATTTGCTTAAAAACGCACGCTTTGCAAGGGGACCGAATGGAGTGGGGCTACAGAAGCTCCTCTTAGATCAAGTCTACATCGCTGGGTACTCACTTCATGATGGGCCAGACTCCAGAGAAGAAGGAGAAGCTCCTACGAATGATCGACAGAAATTGAAGGAAGAATGGGCACGATTTGGAAGAAGTTTCAAGTACCAACCCTACGATGCCATCAAAGATTACTTCGGTCATGAAGTGGGCCTGTACTTTGCATGGCTCGGATTTTACACTACCATGCTGGTTCCTCTTGCCATTGTTGGCTTTCTTGTGTTTATCTATGGAATTGCATCGGCAGGCTCCCACATTCCGGTCCGTGACCTTTGTGATGAAGAAAACAAAGGCCGTTGGTACATGTGCCCACTATGCGACAAACAGTGCAGCTACTGGAATCTGGCCCCAGACACTTGCATGTACGCTTACATCACGCATTTTTTTGACAACGACGGAACAGTGCTTCTTGCCTTTGTGGCGTCCATTTGGGCCACCTTGTTCCTTGAATTTTGGAAACGTCGTCAAGCGACACTTGCTCAGGAATGGCACACAACCGATTTCGAGGAAGATGAAGAACAACTTCGTCCTGAATACAAGAAAAGTTTGCCAGATGAACAACTGCAACTGCTCCTGTTTAAACGAAACCCAGAAACCGGCAAAATAGAACCCGCGGTATCAAAATTTAAGACGTACCGCAGATATGGCACTGTCGTTAGTGTTGTTATTTTCATGATTCTTCTGGTCCTCGGGGCAGCCATAGGCGTAGTGGTGTACCGTGCGGCAGTGTTTGCTGTCTTGAGCAGCAGTGGTGACAACGGGGTTCAAAAACGGGCTCGTATCATAACAACAGCATCTGCAGCATTTCTAAATCTCATAGTAATAATGTTGTTGACCAAAGTTTACATCAAGCTCGCAGTATGGTTGACTGACTGGGAAAACCCACCGACAGAGAGCGCTTATAAAGACAGCTTTACATGGAAGATGTCTTCCTTCCAGTTCGTAAACAACTATTCGGCCATATTTTATATCGCTTTCTTTAAATCGGATCTGATAGTCGGAACACCAGGAAGGTACAGAAGAGTGTTAGGGAAGTATCGACTGGATGGCTGCAGTGAGCAGGGATGCTTTTTGGAACTTGCTGTTCAACTTTTGATTATCATGGTGGGAAAGCAAATTTTCTTCAACATATTTGAGATGGCAATGCCATATCTGAGTTTGATAAAGAATCGCCGAAAGAAAAAGAATCTAGACGATTGCCCTCAATACGAAAAAGACTTCGATCTGACTGCATGTGAAAAGCATTATATGTTCTGGGAATACCTGGAAATAGTTTTGCAGTACGGCTTTGTAACAATGTTTGTCGCTGCTTTTCCCCTCGGTCCACTGTTCGCGCTAATCAACACTATCATTGAGATTCGAATAGACGCTACCAAGTTCTTATGCTTCTTTCGCCGTCCGGACGTTGCCCGCGTGGAGGACATAGGAGCCTGGTACGATGTCCTCGAGACAGTCACCAGGGCCTCGGTGTTGGCAAACGCGTTCATACTGGCGTTTACTTCAGAGTTCATCCCAAAACTTCTTTACATGGTTATGTACGCTCCTGACCGCCATCCCACAGGGCGTGGTACTTTGAAGGGGTATGTCAATTTTACCCTTTCCTCCATTGATTTGAAGACTCTCTACTCATGGGAAAATGGTACCCAGCCAGACAACCCGATGGAAAACTTAAACTATACAAGAAACTACTGCAGGTACCGTGGCTACCATGACAACACCTACCCATACGGCTACTCCAGGACGTACTGGCATCTCCTCACCGCTCGGCTCGCATTCGTTTTCGTGTTTCAATTCATAGTCTACACCATCACTAGTTTTATAGCTTGGCTTGTGCCTGACAGGCCGGATGAGCTCGAGTTCAAGGTGGAAAGAGAGAAACAAGTCATTAAGTCAGCGTTTCATGATGATGATGACGACGACTACAGTGACTTTGAAGAAGACGACGACGAAGACGATGACACAGTGGTATTTGAAGACGCCAAACAAGAGGTTGATGCCGAAGAGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32M45	Anoctamin-4 OS=Homo sapiens OX=9606 GN=ANO4 PE=1 SV=1
Q9BYT9	Anoctamin-3 OS=Homo sapiens OX=9606 GN=ANO3 PE=1 SV=2
A6QLE6	Anoctamin-4 OS=Bos taurus OX=9913 GN=ANO4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000338 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04547 all species →	Anoctamin	Calcium-activated chloride channel	Family	Interproscan
PF16178 all species →	Anoct_dimer	Dimerisation domain of Ca+-activated chloride-channel, anoctamin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007632 all species →	Family	Anoctamin	Interproscan
IPR049452 all species →	Domain	Anoctamin, transmembrane domain	Interproscan
IPR032394 all species →	Domain	Anoctamin, dimerisation domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12308 all species →	ANOCTAMIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005254 all species →	Molecular Function	chloride channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:1902476 all species →	Biological Process	chloride transmembrane transport	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19499	ANO4, TMEM16D; anoctamin-4	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.