Detailed information of evm.model.Ap12.2524 in Astrangia poculata

Genomic Location: Ap12:26711070...26713687
NR annotation: KAJ7373734.1, hypothetical protein OS493_011343 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q2S1V4Tryptophanase OS=Salinibacter ruber (strain DSM 13855 / M31) OX=309807 GN=tnaA PE=3 SV=1
Q0C406Tryptophanase OS=Hyphomonas neptunium (strain ATCC 15444) OX=228405 GN=tnaA PE=3 SV=1
O30971Tryptophanase OS=Rhodobacter capsulatus OX=1061 GN=tnaA PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003246 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01212
all species →		Beta_elim_lyaseBeta-eliminating lyaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015422
all species →		Homologous_superfamilyPyridoxal phosphate-dependent transferase, small domainInterproscan
IPR001597
all species →		DomainAromatic amino acid beta-eliminating lyase/threonine aldolaseInterproscan
IPR015424
all species →		Homologous_superfamilyPyridoxal phosphate-dependent transferaseInterproscan
IPR015421
all species →		Homologous_superfamilyPyridoxal phosphate-dependent transferase, major domainInterproscan
IPR011166
all species →		FamilyBeta-eliminating lyase familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR32325
all species →		BETA-ELIMINATING LYASE-LIKE PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006520
all species →		Biological Processamino acid metabolic processInterproscan
GO:0016829
all species →		Molecular Functionlyase activityInterproscan
GO:0009072
all species →		Biological Processaromatic amino acid metabolic processInterproscan
GO:0016830
all species →		Molecular Functioncarbon-carbon lyase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap12.2524.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP