Detailed information of evm.model.Ap12.2526 in Astrangia poculata

Genomic Location: Ap12:26724799...26727474
NR annotation: XP_020620599.1, uncharacterized protein LOC110058309 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q2S1V4Tryptophanase OS=Salinibacter ruber (strain DSM 13855 / M31) OX=309807 GN=tnaA PE=3 SV=1
Q0C406Tryptophanase OS=Hyphomonas neptunium (strain ATCC 15444) OX=228405 GN=tnaA PE=3 SV=1
Q8R9K5Tryptophanase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=tnaA PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003246 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01212
all species →		Beta_elim_lyaseBeta-eliminating lyaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001597
all species →		DomainAromatic amino acid beta-eliminating lyase/threonine aldolaseInterproscan
IPR015424
all species →		Homologous_superfamilyPyridoxal phosphate-dependent transferaseInterproscan
IPR018176
all species →		Conserved_siteTryptophanase, conserved siteInterproscan
IPR015422
all species →		Homologous_superfamilyPyridoxal phosphate-dependent transferase, small domainInterproscan
IPR015421
all species →		Homologous_superfamilyPyridoxal phosphate-dependent transferase, major domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR32325
all species →		BETA-ELIMINATING LYASE-LIKE PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006520
all species →		Biological Processamino acid metabolic processInterproscan
GO:0016829
all species →		Molecular Functionlyase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap12.2526.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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